DRSC/TRiP Functional Genomics Resources

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Protein Alignment Set2 and Suv39h1

DIOPT Version :10

Sequence 1:NP_572888.2 Gene:Set2 / 32301 FlyBaseID:FBgn0030486 Length:2362 Species:Drosophila melanogaster
Sequence 2:NP_001100426.1 Gene:Suv39h1 / 302553 RGDID:1565028 Length:413 Species:Rattus norvegicus


Alignment Length:370 Identity:100/370 - (27%)
Similarity:138/370 - (37%) Gaps:102/370 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly  1257 PTQSN---PEDSASTTTVLK------ELETGGGVRRSHRIK--------------QKPQGPRASQ 1298
            |...|   |..:.....:||      |.|.   |||..|.|              ||.:..||.|
  Rat    69 PDSENTWEPRQNLKCVRILKQFHKDLEREL---VRRHRRSKPPRHLDPNLANYLVQKAKQRRALQ 130

  Fly  1299 GRGVASVALAPISMDEQL----AELANIEAINEQFLRSEGLNTFQLLKENFYRCARQVSQENAEM 1359
                        ..:::|    :.|..|...||..|.... .:|..:.|  ||....::.....:
  Rat   131 ------------RWEQELNAKRSHLGRITVENEVDLDGPP-RSFVYINE--YRVGEGITLNQVAV 180

  Fly  1360 QC---DCFL--TG-------------DEEAQGHLSCGAGCINRMLMIECGPLCSNGARCTNKRFQ 1406
            .|   ||.|  ||             :::.|..|..|      ..:.||...|..|..|.|:..|
  Rat   181 GCECQDCLLAPTGGCCPGASLHKFAYNDQGQVRLKAG------QPIYECNSRCCCGYDCPNRVVQ 239

  Fly  1407 QHQCWPCRVFRTEK-KGCGITAELLIPPGEFIMEYVGEVIDSEEFERRQHLYSKDRNRHYYFMAL 1470
            :...:...:|||:. :|.|:.....|....|:||||||:|.|||.|||..:|  ||....|...|
  Rat   240 KGIRYNLCIFRTDDGRGWGVRTLEKIRKNSFVMEYVGEIITSEEAERRGQIY--DRQGATYLFDL 302

  Fly  1471 ---RGEAVIDATSKGNISRYINHSCDPNAETQKWTVNG---EL-RIGFFSVKPIQPGEEITFDYQ 1528
               .....:||...||||.::|||||||.:.....::.   .| ||.||:.:.|..|||:||||.
  Rat   303 DYVEDVYTVDAAYYGNISHFVNHSCDPNLQVYNVFIDNLDERLPRIAFFATRTIWAGEELTFDYN 367

  Fly  1529 Y-------------LRYG----------RDAQRCYCEAANCRGWI 1550
            .             ..:|          |....|.|....||.::
  Rat   368 MQVDPVDMESTRMDSNFGLAGLPGSPKKRVRIECKCGTTACRKYL 412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Set2NP_572888.2 valS <709..832 CDD:237855
AWS 1358..1410 CDD:197795 16/69 (23%)
SET_SETD2 1410..1551 CDD:380949 57/172 (33%)
WW 2014..2043 CDD:459800
SRI 2266..2355 CDD:462404
Suv39h1NP_001100426.1 CD_SUV39H1_like 44..92 CDD:349289 5/22 (23%)
SET_SUV39H1 159..413 CDD:380923 77/264 (29%)
Blue background indicates that the domain is not in the aligned region.

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