DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Set2 and nsd2

DIOPT Version :9

Sequence 1:NP_572888.2 Gene:Set2 / 32301 FlyBaseID:FBgn0030486 Length:2362 Species:Drosophila melanogaster
Sequence 2:XP_002936809.1 Gene:nsd2 / 100125213 XenbaseID:XB-GENE-988824 Length:1298 Species:Xenopus tropicalis


Alignment Length:1505 Identity:332/1505 - (22%)
Similarity:513/1505 - (34%) Gaps:485/1505 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   246 GFPIQKPKSKLRVSLKRLKLGGRLESSDSGNSPSSSSPEVEPPALQDENAMDERPKQEQNLSRMV 310
            |.|..|| |...||.:...|.||.:.|.|          ::...:|..|..|..|        .:
 Frog     9 GSPAVKP-SNPEVSRECSVLLGRAQISAS----------LQEGVIQKLNGHDSLP--------FI 54

  Fly   311 DAEENSDSDSQIIFIEIETESPKGEEEQEEGRPVEVEPQDLIDIDMELAKQEPTPD--PEEDLDE 373
            ..|:..|..|::...|...:..|...|.:|.:.:|..|           ...||.:  ||..| :
 Frog    55 PTEKLKDLTSRVFNGESGAQEAKVRFEAQEVQGIETPP-----------STTPTKNGSPEIKL-K 107

  Fly   374 IMVEVLSGPPSLWSA--DDEAEEEEDATVQRATPPGKEPAADSCSSAPRRSRRSAPLSGSSRQGK 436
            |....::|.|...|:  .|..|||..                             |....|::|:
 Frog   108 ITKTYMNGKPLFESSICGDRGEEEPQ-----------------------------PEQKKSKRGR 143

  Fly   437 TLEETFAEIAAESSKQILEAEESQDQEEQHILIDLIEDTLSESEVTSSVSPTIEHMVVEEVVVEE 501
            ..:...:|...:||.::....||...:           .:||||.       :||          
 Frog   144 KRKIITSEANEKSSSEMPSHSESSKMK-----------PVSESEF-------LEH---------- 180

  Fly   502 NQLVDEADEILDSKQEFVIKKVFSESDNIAASLNKDIFEPKVETKATCGEVVPRPEMVTEDVYIT 566
                       .:|::|.:|  :|..|.:.:.::...:.|       |        |||.|..:.
 Frog   181 -----------KNKEDFSLK--YSVGDVVWSKVSGYPWWP-------C--------MVTSDPVLY 217

  Fly   567 EGIAATLEKSAV--------VTKPTTEMIAETKLSDEVVIEPPLKDESDPKQTEVELPESKPAVN 623
            .......:|..|        ...|....|:|..:       .|.|.|::......|..:..|.  
 Frog   218 SHTKVKGQKKNVRQYHVQFFGNAPERAWISEKSM-------VPFKGENEYDHLCQESAKQAPT-- 273

  Fly   624 IPKSERILSAEVETTSSPLVPPECCTLESVSGPVLLETSLSTEEKSNENVETTPLKTEAAKE--- 685
              |:|:          :.|:.|       ::|.:..:..:..|: :.|.:..||   |..||   
 Frog   274 --KAEK----------TKLLKP-------ITGKIRAQWDIGIEQ-AKEGILMTP---EERKEKFT 315

  Fly   686 -----DSPP---------AAPEEEASNSSEEPNFLLEDYESNQEQVAEDEMMKCNNQKGQKQTPL 736
                 |.|.         ..|.|.:..|:|.|                           ||:   
 Frog   316 FIYIKDRPQLNPRVASEVGVPVESSEKSTESP---------------------------QKE--- 350

  Fly   737 PEMKEPEKPVAETVSKKEKAMENPARSSPAIVDKKVRAGEMEKKVVKSTKGTVPEKKMD------ 795
                      ..:..|:.:....||.|      |:|...:      |:|....||...|      
 Frog   351 ----------GSSSYKRRRVSRTPAAS------KEVDPAD------KTTTAKGPENSSDPKGMTS 393

  Fly   796 --SKKSCAAVTPAKQKESG---------KSAKEAILKKETEKEKSSAKLDSSSPNTLDKKGKDTA 849
              |||...|.||..:|...         |...|.|.:.....::...:|..|..|.|..|.|...
 Frog   394 PASKKRSGAYTPRSRKGDAVNQFLVFCQKHKDEVINEHPDASDEEIEELLESQWNMLSNKQKARY 458

  Fly   850 QWSPQLQTLPKSSTKPPQESAPSVIS------KTTSNQPAPKEEQHAAKKGLSDNS--------P 900
            .....:.|.|||     :|.:.|:..      |||.||....|.|.:.:|.|..::        |
 Frog   459 NTKFAILTSPKS-----EEDSGSLHGHKRNHLKTTHNQTEDSEIQESPRKRLRMHNRKQRETCKP 518

  Fly   901 PSVLKAKEKAVSGFVECDAMFKAMDLANAQLRLDEKNKKK-LKKVPTKVEAPPKVEPPTAVPVPG 964
            |     |.:|.:......|||   .|::|...|.::|:.. |..|              |:||  
 Frog   519 P-----KARASAPVKNSPAMF---SLSDACKPLKKRNRSSTLGSV--------------ALPV-- 559

  Fly   965 QKKSLSGKTSLRRNTVYEDSPNLERNSSP--SSDSAQANTSA--GKLKPSKVKKKINPRRSTICE 1025
             .|| |...||..|.| .||...||:.||  |:|.:||..|.  .|.:...:||::   ...:||
 Frog   560 -SKS-SSPASLTENEV-SDSQGDERSESPSESADESQAEISMLHRKSERGAMKKEL---VCQVCE 618

  Fly  1026 AAKDLRSSSSSSTPTREVAASSPVSTSSDSSSKRNGSKRTTSDLDGGSKLDQRRYTICEDRQPET 1090
            ...||...        |....|....|....|.|...|....:...|:    |...:|::...: 
 Frog   619 KVGDLMLC--------EGVCCSAFHLSCIGLSTRPAGKYLCKECTSGA----RSCFLCKESNRD- 670

  Fly  1091 AIPVPLTKRRFSMHPKASANPLHDTLLQ----TAGKKRGRKEGKESLSRQNSLDSSSSASQGAPK 1151
                  .||....|   .....|::.|:    ...:.||   .:..|.|..:...|:.::..|.|
 Frog   671 ------VKRCIVPH---CGKFYHESCLRKYPLAVFESRG---FRCPLHRCATCYFSNPSNPRASK 723

  Fly  1152 KKALKSAEILSA-------------ALLETE---SSESTSSGSKMSRWDVQTSPELEAANPFGDI 1200
            .|.::......|             ||..|.   ||...::.:|.....:..|.....:|. |.:
 Frog   724 GKMVRCVRCPLAYHGAESCIVAGCTALTSTSIICSSHFAANKAKSHHAHINVSWCFVCSNG-GSL 787

  Fly  1201 -------AKFIEDGVNLLKRDKVDEDQRKEGQ---DEVKREADPE-EDEFAQRVANME-TPATTP 1253
                   |.|..|.:|:         :..:|.   ::.:....|. .|....::.|.. .||...
 Frog   788 LCCESCPAAFHPDCLNI---------EMPDGSWFCNDCRLGKKPRFNDIIWVKLGNYRWWPAEVC 843

  Fly  1254 TPSPTQSNPEDSASTTTVLKELETGGGVRRSHRIKQKP---------------------QGPRAS 1297
            .|.....|.:                  :..|.|.:.|                     :|.|.|
 Frog   844 HPKNVPPNIQ------------------KMKHAIGEFPVFFFGSKDYYWTHQARVFPYMEGDRGS 890

  Fly  1298 QGRGVASVALAPISMDEQLAELANIEAINEQFLRSEGLNTFQLLKENFYRCARQ----VSQENAE 1358
            :..|..|                    |.:.|     .|..|..:..|....||    |:|||.:
 Frog   891 KHHGGKS--------------------IGKVF-----KNALQEAETRFCEIMRQREAKVTQENEK 930

  Fly  1359 M---------------------------QCDCFLTGDEEAQGHLSCG--AGCINRMLMIECGP-L 1393
            .                           :|:|      :......||  :.|:|||||.||.| :
 Frog   931 KPPPYKHIKVNKPYGKVQVYTADISEIPKCNC------KPSSEKPCGFDSECLNRMLMYECHPQV 989

  Fly  1394 CSNGARCTNKRFQQHQCWPCRVFRTEKKGCGITAELLIPPGEFIMEYVGEVIDSEE-FERRQHLY 1457
            |..|.||.|:.|.:.|....::.:||.||.|:.|...|..|||:.||:||:||.|| ..|.:|..
 Frog   990 CPAGDRCQNQCFNKRQYPETKIIKTEGKGWGLIATRDIKKGEFVNEYIGELIDEEECMYRIRHAQ 1054

  Fly  1458 SKDRNRHYYFMALRGEAVIDATSKGNISRYINHSCDPNAETQKWTVNGELRIGFFSVKPIQPGEE 1522
            ..|.. |:|.:.:..:.:|||..|||.||::||||.||.|||||:|||:.|:|.|:|:.|..|||
 Frog  1055 ENDIT-HFYMLTIDKDRIIDAGPKGNFSRFMNHSCQPNCETQKWSVNGDTRVGLFAVRDIPAGEE 1118

  Fly  1523 ITFDYQYLRYGRDAQRCYCEAANCRGWIGGEPDSDEGEQLDEESDSDAEMDEEELEAEPEEGQPR 1587
            :||:|.....|.:...|.|.|.||.|::|..|           .::.|...||::: :|::.|.:
 Frog  1119 LTFNYNLDCLGNEKTICRCGAPNCSGFLGDRP-----------KNNTASSHEEKVK-KPKKKQKK 1171

  Fly  1588 KSAKAKAKSK 1597
            :..|...|.:
 Frog  1172 RRTKTDGKKQ 1181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Set2NP_572888.2 AWS 1358..1410 CDD:197795 19/81 (23%)
SET 1414..1533 CDD:214614 56/119 (47%)
PostSET 1535..1551 CDD:214703 6/15 (40%)
WW 2014..2043 CDD:278809
SRI 2270..2348 CDD:285448
nsd2XP_002936809.1 MSH6_like 188..307 CDD:99898 26/164 (16%)
HMG-box 414..463 CDD:238037 9/48 (19%)
TNG2 <484..654 CDD:227367 56/207 (27%)
PHD1_NSD1_2 613..655 CDD:277118 10/49 (20%)
PHD2_NSD2 660..706 CDD:277121 8/58 (14%)
PHD3_NSD2 707..760 CDD:277124 10/52 (19%)
PHD4_NSD2 777..817 CDD:277127 7/49 (14%)
WHSC1_related 822..916 CDD:99899 20/136 (15%)
AWS 967..1004 CDD:375420 17/36 (47%)
SET_NSD2 1006..1147 CDD:380988 63/141 (45%)
PHD5_NSD2 1185..1227 CDD:277130
C5HCH 1226..1273 CDD:375464
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D507784at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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