DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1998 and Ch25h

DIOPT Version :9

Sequence 1:NP_001285210.1 Gene:CG1998 / 32300 FlyBaseID:FBgn0030485 Length:406 Species:Drosophila melanogaster
Sequence 2:NP_001020586.1 Gene:Ch25h / 309527 RGDID:1310575 Length:298 Species:Rattus norvegicus


Alignment Length:263 Identity:60/263 - (22%)
Similarity:95/263 - (36%) Gaps:86/263 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 FGTTIFTMLVYWTVGTLYTFMDLTNRPAC-----LRKYKIQPGTNEPVEVRRLLKVIWCVVCNQI 215
            |...||::..|......:..:|:    .|     ||:|||.|..:.  .||:||..:...:...:
  Rat    38 FFPVIFSIFTYLGFCLPFVVLDV----LCPWVPILRRYKIHPDFSP--SVRQLLPCLGLTLYQHL 96

  Fly   216 FVGIPLAY----ASYRLMEIRGLSDIRDLPTFHWVCFELTVCILMEELGFYYSHRLLHHK--HIY 274
            ....|:..    .|..|:.       |:.|....:...:.:|:|:.:...:..| |||||  .:|
  Rat    97 VFVFPVTLMHWARSPALLP-------REAPELSQLLSHVLICLLLFDTEIFAWH-LLHHKVPWLY 153

  Fly   275 KYIHKQHHE--------------WTA-------PISVTAIYCHPIEHIFSNLLPPFLGVFLMGSH 318
            :..||.||:              |..       .::|..:.|||:..:          ||    |
  Rat   154 RTFHKVHHQNSSSFALATQYMSVWELLSLTFFDVLNVAMLQCHPLTIL----------VF----H 204

  Fly   319 VATAWLWFALAILSTLNAHSGYHLP----------FFPSPEAHDFHHLKFNNCFG--------VL 365
            |...||        ::..||||..|          ::.....||.||.:||..|.        :|
  Rat   205 VVNIWL--------SVEDHSGYDFPWSTHRLVPFGWYGGVAHHDLHHSQFNCNFAPYFTHWDKML 261

  Fly   366 GVL 368
            |.|
  Rat   262 GTL 264

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1998NP_001285210.1 ERG3 <245..374 CDD:225546 39/165 (24%)
FA_hydroxylase 250..374 CDD:282034 39/160 (24%)
Ch25hNP_001020586.1 ERG3 53..265 CDD:225546 56/248 (23%)
FA_hydroxylase 128..263 CDD:282034 37/157 (24%)
Histidine box-1 142..146 2/4 (50%)
Histidine box-2 157..161 2/3 (67%)
Histidine box-3 238..244 3/5 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3000
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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