DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1998 and Msmo1

DIOPT Version :9

Sequence 1:NP_001285210.1 Gene:CG1998 / 32300 FlyBaseID:FBgn0030485 Length:406 Species:Drosophila melanogaster
Sequence 2:NP_543162.1 Gene:Msmo1 / 140910 RGDID:620281 Length:293 Species:Rattus norvegicus


Alignment Length:261 Identity:82/261 - (31%)
Similarity:129/261 - (49%) Gaps:28/261 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 WQSQWDKFIDSFGDEPMVLWVFGTTIFTMLVYWTV---GTLYTFMDLTNRPACLRKYKIQPGTNE 196
            :::.|...:|::....:..|  |:.|....:|:..   |.|:.|:..      :||||||....|
  Rat    33 FKNAWVYMLDNYTKFQIATW--GSLIVHETIYFLFSLPGFLFQFIPF------MRKYKIQKDKPE 89

  Fly   197 PVEVRRLLKVIWCVVCNQIFVGIPLAYASYRLMEIRGLS-DIRDLPTFHWVCFELTVCILMEELG 260
            ..|.:  .|.:..::.|..|:.:||...:|...|...:. |...:|.:::.......|.::|:..
  Rat    90 TFEGQ--WKCLKGILFNHFFIQLPLICGTYYFTEFFNIPYDWERMPRWYFTLARCLGCAVIEDTW 152

  Fly   261 FYYSHRLLHHKHIYKYIHKQHHEWTAPISVTAIYCHPIEHIFSNLLPP--FLGVFLMGSHVATAW 323
            .|:.|||||||.|||||||.|||:.||..:.|.|.||:|.:   :|..  |:|:.|:..||...|
  Rat   153 HYFLHRLLHHKRIYKYIHKVHHEFQAPFGIEAEYAHPLETL---ILGTGFFIGIVLLCDHVILLW 214

  Fly   324 LWFALAILSTLNAHSGY--------HLPFFPSPEAHDFHHLKF-NNCFGVLGVLDRLHGTDSLFR 379
            .|..:.:|.|::.||||        ::||:.....|||||:.| .|........||:.|||..:.
  Rat   215 AWVTMRLLETIDVHSGYDIPLNPLNYIPFYTGARHHDFHHMNFIGNYASTFTWWDRIFGTDVQYH 279

  Fly   380 A 380
            |
  Rat   280 A 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1998NP_001285210.1 ERG3 <245..374 CDD:225546 52/139 (37%)
FA_hydroxylase 250..374 CDD:282034 52/134 (39%)
Msmo1NP_543162.1 FA_hydroxylase 143..274 CDD:397991 52/133 (39%)
Histidine box-1 157..161 3/3 (100%)
Histidine box-2 170..174 2/3 (67%)
Histidine box-3 249..255 4/5 (80%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3000
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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