DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syt12 and Sytl3

DIOPT Version :10

Sequence 1:NP_572878.1 Gene:Syt12 / 32290 FlyBaseID:FBgn0261085 Length:787 Species:Drosophila melanogaster
Sequence 2:XP_006227950.1 Gene:Sytl3 / 499017 RGDID:1561992 Length:609 Species:Rattus norvegicus


Alignment Length:587 Identity:128/587 - (21%)
Similarity:209/587 - (35%) Gaps:212/587 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   255 EGERKAPALKRRNSSTNPFLCESTEQIPSNPISEPLNATVASLEKTTISTSECTPITAPLETPNG 319
            |..||.|...||.::....|  .:.|..|:.||      |.......:|.|:|            
  Rat   123 ERARKFPTAGRRETAGARLL--QSYQRQSSKIS------VVPPTPPPLSESQC------------ 167

  Fly   320 PISTDTPSTI----HHNG-NPFVER--ESLSSRLLKIHNTTNPFTGLSQRVKGPHLL-------- 369
               ..:|:.:    |..| |..||.  .|:::::.|:..:.|..|  |::    |||        
  Rat   168 ---GGSPNRLQELGHFRGFNKSVENLFLSVTTQMRKLSKSQNDMT--SEK----HLLAMDPRQCM 223

  Fly   370 -----------------QKTISEDYL--FRKLGVNCPMANGNGTGPGSGHVNGNGNGTWSFGRSL 415
                             :||.:.|.|  |.:.....|.:                        .:
  Rat   224 GHTERRSQSDTAVNVTSRKTSTPDILKAFHQEDPRHPPS------------------------PV 264

  Fly   416 LRQD--------STLSLGMGLGRRNSSQVSLDSHAGSVPGSMDGINLERAISCDSVTSDSTLFLD 472
            |:||        ||:..|   |.|:.|.:|::|....: |:.|..|                   
  Rat   265 LKQDTPPSSPTHSTVFSG---GLRHGSLISVNSTCTEM-GNFDNAN------------------- 306

  Fly   473 QLDQPYTQITGYLCVGLNYDQMSISNEGMELTVSVL------EAKGLICPFSVESLDTFVRIYLV 531
                    :||.:...::|   .:::..:|:.:...      |.|...|       :.:|:.||:
  Rat   307 --------VTGEIEFAIHY---CVNSHSLEICIKTCKNLAYGEDKRRKC-------NPYVKTYLL 353

  Fly   532 PDH--PGAMQTKVVKGTLTPSYNESFDFWLHKRQ-ARHSLWFHLYHNGPAHTLIGEAEMEIGEMP 593
            ||.  .|..:|:|.|.||.|::.|:..:.:...| |...|...::|.|   ||  ...:.:||:.
  Rat   354 PDRSSQGKRKTRVQKNTLDPTFEETLKYQVDPAQLATRRLQVSVWHLG---TL--ARRVFLGEVI 413

  Fly   594 RPITTWIPLSDSRKCNARW------------------GELMFSLS-YLPTAER------------ 627
            .|:.|| ....|...||||                  |||..... .||...|            
  Rat   414 LPLATW-DFEGSAAQNARWYPLRAKAEKYEENIPQTNGELAVRAKLVLPVGPRMLQEAQEDQLAL 477

  Fly   628 ---LTIVVVKARNL--KLDGEQPAPESAETVHSVFVKVYLMDKDRKVLKKRTSLKRKDRSPIFNE 687
               |.:||:.|:||  :.||         |::| |||..|...|::.|:.::.:.:|...|.:..
  Rat   478 NGQLCLVVLGAKNLPVRSDG---------TLNS-FVKGCLTLPDQQKLRVKSPVLKKQACPQWKH 532

  Fly   688 SMIFS-VPPPSLTTTQLRVTVFGVTTSGVTP--LGHIVAG----------SCAVGKGLRHWHQML 739
            |.:|: |....|..:.|.:||:.....|:..  ||....|          ||:..|  ..|.::|
  Rat   533 SFVFNGVSSSQLRQSTLELTVWDQAMFGMNDRLLGEAKLGSKGGAPGCTDSCSQSK--LQWQKVL 595

  Fly   740 SS 741
            ||
  Rat   596 SS 597

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt12NP_572878.1 C2 503..602 CDD:425499 28/107 (26%)
C2B_Synaptotagmin-12 612..753 CDD:176051 43/179 (24%)
Sytl3XP_006227950.1 PHD_SF 14..123 CDD:473978 128/587 (22%)
FYVE_like_SF 60..108 CDD:333710
C2 308..435 CDD:472691 37/142 (26%)
C2B_SLP_1-2-3-4 449..609 CDD:175987 42/161 (26%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.