DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syt12 and cla-1

DIOPT Version :10

Sequence 1:NP_572878.1 Gene:Syt12 / 32290 FlyBaseID:FBgn0261085 Length:787 Species:Drosophila melanogaster
Sequence 2:NP_001294148.2 Gene:cla-1 / 177539 WormBaseID:WBGene00018468 Length:8922 Species:Caenorhabditis elegans


Alignment Length:178 Identity:51/178 - (28%)
Similarity:81/178 - (45%) Gaps:18/178 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   602 LSDSRKCNARWGELMFSLSYLPTAERLTIVVVKARNLK-LDGEQPAPESAETVHSVFVKVYLMDK 665
            |||| .|:   |.:..||.| ....||...:::||.|| .|..:.||       :.||||||:..
 Worm  8709 LSDS-SCH---GHIQVSLGY-DGNSRLVAKIIRARGLKSRDQSRSAP-------NPFVKVYLLPG 8761

  Fly   666 DRKVLKKRTSLKRKDRSPIFNESMIFSVPPPSLTTTQLRVTVFGVTTS-GVTPLGHI---VAGSC 726
            .:...|:||.......:|.:|:.:.:.|.|.:|.|..|..||...... ...|||::   :|...
 Worm  8762 RKVSHKRRTRFVDSSCAPEWNQVLEYQVAPHTLNTMFLEFTVCDYQRDVDDLPLGNVQIPLADKS 8826

  Fly   727 AVGKGLRHWHQMLSSLRKPVAMWHVLRRAVNQPIFTGGAEAVVAAMQN 774
            |:..|.| |:.:..|..:|:...::...:::|......|....||:.|
 Worm  8827 AINTGPR-WYPLQGSYDQPIPQHYMNGTSLSQIPSIAAASKHSAAVHN 8873

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt12NP_572878.1 C2 503..602 CDD:425499 51/178 (29%)
C2B_Synaptotagmin-12 612..753 CDD:176051 41/145 (28%)
cla-1NP_001294148.2 PDZ_RIM-like 8565..8658 CDD:467198
C2A_RIM1alpha 8714..8838 CDD:175997 40/135 (30%)
Blue background indicates that the domain is not in the aligned region.

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