DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syt12 and LOC100497338

DIOPT Version :10

Sequence 1:NP_572878.1 Gene:Syt12 / 32290 FlyBaseID:FBgn0261085 Length:787 Species:Drosophila melanogaster
Sequence 2:XP_002938753.2 Gene:LOC100497338 / 100497338 XenbaseID:XB-GENE-29083647 Length:398 Species:Xenopus tropicalis


Alignment Length:368 Identity:97/368 - (26%)
Similarity:159/368 - (43%) Gaps:51/368 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   414 SLLRQDSTLSLGMGLGRRNSSQVSL---------------DSHAGSVPGSMDGINLERAISCDSV 463
            |:.|.:.|...|..:.::.:|.:.|               ||....:...|:  .||..::....
 Frog    51 SVARNEKTYLDGTYVEKKTTSNILLKSVAPTFLEITRKEQDSKIQLMRKEME--KLEERLTPSPP 113

  Fly   464 TSDSTLFLDQLD-QPYTQITGYLCVGLNYDQMSISNEGMELTVSVLEAKGLICPFSVESLDTFVR 527
            :::|   ||.|| .|.....|.|.:.|.||:     :.|.|.::|:||..|    ...|.|.|||
 Frog   114 STES---LDDLDSNPPLMPRGKLKLSLYYDK-----KKMALLINVIEATDL----PAHSHDPFVR 166

  Fly   528 I--YLVPDHPGA--------MQTKVVKGTLTPSYNESFDFWLHKRQ-ARHSLWFHL--YHNGPAH 579
            |  :...|.|.:        ..|||||.:..|.:.|||...|.:.| ...||.|.:  :.....|
 Frog   167 IKVFSKADDPHSSVQTIIHEWDTKVVKNSRNPVFVESFTCTLKESQLLSTSLKFEVKDFDKYSRH 231

  Fly   580 TLIGEAEMEIGEMPRPITTWIPLSDSRKCNARWGELMFSLSYLPTAERLTIVVVKARNLKLDGEQ 644
            |||||....:..:....|..:......|.....||::.||..||||:::.:.::|.:...|    
 Frog   232 TLIGETRATLQGLKTSKTLELYEDLQEKTKDAIGEVLISLKCLPTAQKIEVGILKFKTSSL---- 292

  Fly   645 PAPESAETVHSVFVKVYLMDKDRKVLKKRTSLKRKDRSPIFNESMIFSVPPPSLTTTQLRVTVFG 709
                |..:...|:.::.:.....|...:::||:.|.:..:|||:.:|.:|.|..|...:.|:::.
 Frog   293 ----STISERDVYARIDVFTNQHKQKHQKSSLRAKSKVTVFNETFLFGLPDPGKTHCLILVSLYE 353

  Fly   710 VTTSGVTPLGHIVAGSCAVGKGLRHWHQMLSSLRKPVAMWHVL 752
            ...||...:|....|:........||..|:.:||:|||.||.|
 Frog   354 TIASGRKLIGQTSLGNQNTKAEDGHWELMMQTLRQPVAKWHPL 396

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt12NP_572878.1 C2 503..602 CDD:425499 34/111 (31%)
C2B_Synaptotagmin-12 612..753 CDD:176051 39/141 (28%)
LOC100497338XP_002938753.2 C2 129..258 CDD:472691 40/137 (29%)
C2 265..396 CDD:472691 38/138 (28%)

Return to query results.
Submit another query.