DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC4 and hda10

DIOPT Version :9

Sequence 1:NP_001259507.1 Gene:HDAC4 / 32278 FlyBaseID:FBgn0041210 Length:1269 Species:Drosophila melanogaster
Sequence 2:NP_190052.1 Gene:hda10 / 823592 AraportID:AT3G44660 Length:142 Species:Arabidopsis thaliana


Alignment Length:138 Identity:34/138 - (24%)
Similarity:54/138 - (39%) Gaps:29/138 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   933 CGGLGVDLDTTWNEHHTATAARMAAGCVIDLAL--KTAKGDLRNGFA---VVRPPGHHAEANLAM 992
            |||        :.:.:.|....:..|.::|..|  :..:.|....||   .::.||.|.| ||..
plant    13 CGG--------YTKENVARCWTVETGILLDTELPNEIPENDYIKYFAPDFSLKIPGGHIE-NLNT 68

  Fly   993 GFCFFNSIAI-AAKLLR--QRMPEVRR------ILIVDWDVHHGNGTQQAFYQSPDILYLSIHRH 1048
            . .:.:||.: ..:.||  |..|.|:.      ..|.|:|....|...:...:|.|   ..|.|.
plant    69 K-SYISSIKVQILENLRYIQHAPSVQMQEVPPDFYIPDFDEDEQNPDVRVDQRSRD---KQIQRD 129

  Fly  1049 DDGNFFPG 1056
            |:  :|.|
plant   130 DE--YFDG 135

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC4NP_001259507.1 iSH2_PI3K_IA_R 43..>87 CDD:304922
HDAC_classIIa 837..1211 CDD:212544 34/138 (25%)
hda10NP_190052.1 Arginase_HDAC <3..100 CDD:302587 23/96 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0123
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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