DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC4 and hdac11

DIOPT Version :10

Sequence 1:NP_001259507.1 Gene:HDAC4 / 32278 FlyBaseID:FBgn0041210 Length:1269 Species:Drosophila melanogaster
Sequence 2:XP_021335266.2 Gene:hdac11 / 431718 ZFINID:ZDB-GENE-040704-7 Length:375 Species:Danio rerio


Alignment Length:406 Identity:94/406 - (23%)
Similarity:152/406 - (37%) Gaps:98/406 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   810 HRQLMSTLYASQLRNHQPSASGSPPHKVTTGLAYDPLMLKHSCICGDNAQHPEHSGRLQSVWARL 874
            |.:|.:.:.||.|    |... ||.:.:|              ..|....||..:|:...|...|
Zfish    15 HTELYAEVPASCL----PIVY-SPEYNIT--------------FMGLEKLHPFDAGKWGKVIRFL 60

  Fly   875 NETDLVKRCDRLRARKATQEELQTVHTEAH------AMLFGSNQCQLSRPKLENTLSASF----- 928
            .|...:.....:.||:|::.:|..|||..:      |:|.||.:..|....:.......|     
Zfish    61 KEEQFITDEIIVLAREASEADLLVVHTARYLNRLKNAILEGSREWSLVVATITEIPPLLFLPNFL 125

  Fly   929 --------VRLSCGGLGVDLDTTWNEHHTATAARMA--AGCVIDLALKTAKGDLRNGFAVVRPPG 983
                    :|...||             |..|.::|  .|..|::.         .||       
Zfish   126 VQRKVLRPLRTQTGG-------------TIMAGKLAIDRGWAINVG---------GGF------- 161

  Fly   984 HHAEANLAMGFCFFNSIAIAAKLLRQRMPEVRRILIVDWDVHHGNGTQQAFYQSPDILYLSIH-R 1047
            ||..::...|||.:..|.:|.|.|.:|:..|....|:|.|.|.|||.::.|.:...:..:.:: |
Zfish   162 HHCSSDKGGGFCAYADITLAIKFLFERVEGVASATIIDLDAHQGNGHERDFLEDRRVYIMDVYNR 226

  Fly  1048 HDDGNFFPGTGGPTECGSGAGLGFNVNISWSGALNPPLGDAEYIAAFRTVVMPIARSFNPDIVLV 1112
            |    .:||.|     .:...:...|.:.|.      ..|:||:...............|||::.
Zfish   227 H----IYPGDG-----YAKRAIKRKVELDWG------TEDSEYLQKVDLHSEGALNEARPDIIIY 276

  Fly  1113 SSGFDAATGHPAPLGGYHVSPACFGFMTRE--LLQLANGK---VVLALEGGYD---LAAICDSAQ 1169
            ::|.|...|.  ||||..:||.  |.:.|:  :.:.|..:   :::...|||.   ...|.||..
Zfish   277 NAGTDILDGD--PLGGLAISPQ--GIIKRDEIIFRAARRRGIPILMVTSGGYQKKTARIIADSIL 337

  Fly  1170 ECVR-ALLGDPAAPIA 1184
            ...| .|:|:.|..:|
Zfish   338 NLHRQGLIGEEALDVA 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC4NP_001259507.1 ClassIIa_HDAC_Gln-rich-N 43..>87 CDD:421006
HDAC_classIIa 837..1211 CDD:212544 86/379 (23%)
hdac11XP_021335266.2 None
Blue background indicates that the domain is not in the aligned region.

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