DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC4 and hdac10

DIOPT Version :9

Sequence 1:NP_001259507.1 Gene:HDAC4 / 32278 FlyBaseID:FBgn0041210 Length:1269 Species:Drosophila melanogaster
Sequence 2:XP_021326130.1 Gene:hdac10 / 327253 ZFINID:ZDB-GENE-030131-5464 Length:723 Species:Danio rerio


Alignment Length:472 Identity:149/472 - (31%)
Similarity:228/472 - (48%) Gaps:78/472 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   813 LMSTLYASQLRNHQPSASGSPPHKVTTGLAYDPLMLKHSCICGDNAQHPEHSGRLQSVWARLNET 877
            |:..|:..:.......||||       .|.:|..|.::..:..|.|...|...||...:..|...
Zfish    34 LLCCLFHRRQTKSVKMASGS-------ALIFDEEMSRYKLLWTDPACEIEVPERLTVSYEALRTH 91

  Fly   878 DLVKRCDRLRARKATQEELQTVHTEAHAMLF----GSNQCQL-SRPKLENTLSASFVRLSCGGLG 937
            .|.:||..:..|:||::|:...|:|.:....    |.|..:| :..|..|               
Zfish    92 GLAQRCKAVPVRQATEQEILLAHSEEYLEAVKQTPGMNVEELMAFSKKYN--------------- 141

  Fly   938 VDLDTTWNEHHTATAARMAAGCVIDLALKTAKGDLRNGFAVVRPPGHHAEANLAMGFCFFNSIAI 1002
             |:....|.:|   .|::|||..:.|.....|.::|||.|:|||||||::.:.|.|||.||::||
Zfish   142 -DVYFHQNIYH---CAKLAAGATLQLVDSVMKREVRNGMALVRPPGHHSQRSAANGFCVFNNVAI 202

  Fly  1003 AAKLLRQRMPEVRRILIVDWDVHHGNGTQQAFYQSPDILYLSIHRHDDGNFFPG--TGGPTECGS 1065
            || |..::...:.||||||||||||.|.|..|.:.|.:||.|.||::..:|:|.  ....:..|.
Zfish   203 AA-LYAKKNYNLNRILIVDWDVHHGQGIQYCFEEDPSVLYFSWHRYEHQSFWPNLPESDYSSVGK 266

  Fly  1066 GAGLGFNVNISWS--GALNPPLGDAEYIAAFRTVVMPIARSFNPDIVLVSSGFDAATGHPAPLGG 1128
            |.|.|||:|:.|:  |..|     ::|:|||..|::|:|..|:|::|:||:|||:|.|.|.  |.
Zfish   267 GKGSGFNINLPWNKVGMTN-----SDYLAAFFHVLLPVAYEFDPELVIVSAGFDSAIGDPE--GE 324

  Fly  1129 YHVSPACFGFMTRELLQLANGKVVLALEGGYDLAAICDSAQECVRALLGDPAAPIAKAELERPPC 1193
            ....|..|..:|..|:.||.||:.:.|||||:|.::..|..:.|.:|||||...|:..   ...|
Zfish   325 MCALPEIFAHLTHLLMPLAAGKMCVVLEGGYNLTSLGQSVCQTVHSLLGDPTPRISGL---GTAC 386

  Fly  1194 QNAINTLQKTIAIQQTHWPCVRMLEHTVGLSALETLKVEHDESET------INAMAGLSMQSMHR 1252
            .:|:.::|....:|.::|...:.|.                :|||      ::|..|        
Zfish   387 DSALESIQNVRNVQSSYWSSFKHLA----------------QSETNPKRPRLDATNG-------- 427

  Fly  1253 TLSRDDSEEPMDQDETK 1269
              ...:|.||..:...|
Zfish   428 --GPKESSEPASESNPK 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC4NP_001259507.1 iSH2_PI3K_IA_R 43..>87 CDD:304922
HDAC_classIIa 837..1211 CDD:212544 132/382 (35%)
hdac10XP_021326130.1 HDAC10 68..404 CDD:212546 129/365 (35%)
Arginase_HDAC <607..717 CDD:327367
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0123
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1484694at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2991
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.850

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