DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC4 and Hdac11

DIOPT Version :10

Sequence 1:NP_001259507.1 Gene:HDAC4 / 32278 FlyBaseID:FBgn0041210 Length:1269 Species:Drosophila melanogaster
Sequence 2:NP_659168.1 Gene:Hdac11 / 232232 MGIID:2385252 Length:347 Species:Mus musculus


Alignment Length:416 Identity:95/416 - (22%)
Similarity:155/416 - (37%) Gaps:115/416 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   818 YASQLRNHQPSASG----SPPHKVTTGLAYDPLMLKHSCICGDNAQHPEHSGRLQSVWARLNETD 878
            :|:||..|.|....    ||.:.:|              ..|....||..:|:...|...|.|..
Mouse     3 HATQLYQHVPEKRWPIVYSPRYNIT--------------FMGLEKLHPFDAGKWGKVINFLKEEK 53

  Fly   879 LVKRCDRLRARKATQEELQTVH-----------------TEAHAMLFGSN---QCQLSRPKLENT 923
            |:.....:.||:|::|:|..||                 ||...::|..|   |.::.||     
Mouse    54 LLSDGMLVEAREASEEDLLVVHTRRYLNELKWSFVVATITEIPPVIFLPNFLVQRKVLRP----- 113

  Fly   924 LSASFVRLSCGGLGVDLDTTWNEHHTATAARMAA--GCVIDLALKTAKGDLRNGFAVVRPPGHHA 986
                 :|...||             |..|.::|.  |..|::.         .||       ||.
Mouse   114 -----LRTQTGG-------------TIMAGKLAVERGWAINVG---------GGF-------HHC 144

  Fly   987 EANLAMGFCFFNSIAIAAKLLRQRMPEVRRILIVDWDVHHGNGTQQAFYQSPDILYLSIH-RHDD 1050
            .::...|||.:..|.:|.|.|.:|:..:.|..|:|.|.|.|||.::.|.....:..:.:: ||  
Mouse   145 SSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAHQGNGHERDFMGDKRVYIMDVYNRH-- 207

  Fly  1051 GNFFPGTGGPTECGSGAGLGFNVNISWSGALNPPLGDAEYIAAFRTVVMPIARSFNPDIVLVSSG 1115
              .:||.....|     .:...|.:.|.      ..|.||:......|....:...||:|:.::|
Mouse   208 --IYPGDRFAKE-----AIRRKVELEWG------TEDEEYLEKVERNVRRSLQEHLPDVVVYNAG 259

  Fly  1116 FDAATGHPAPLGGYHVSPACFGFMTRE-----LLQLANGKVVLALEGGYDLAAICDSAQECVRAL 1175
            .|...|.  .|||..:|||  |.:.|:     :::..:..:::...|||         |:....:
Mouse   260 TDVLEGD--RLGGLSISPA--GIVKRDEVVFRVVRAHDIPILMVTSGGY---------QKRTARI 311

  Fly  1176 LGDPAAPIAKAELERP--PCQNAINT 1199
            :.|....:....|..|  ||.:|.|:
Mouse   312 IADSILNLHDLGLIGPEFPCVSAQNS 337

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC4NP_001259507.1 ClassIIa_HDAC_Gln-rich-N 43..>87 CDD:421006
HDAC_classIIa 837..1211 CDD:212544 88/393 (22%)
Hdac11NP_659168.1 Histone deacetylase 14..318 84/384 (22%)
HDAC_classIV 35..319 CDD:212519 80/350 (23%)
Blue background indicates that the domain is not in the aligned region.

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