DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC4 and hda-5

DIOPT Version :10

Sequence 1:NP_001259507.1 Gene:HDAC4 / 32278 FlyBaseID:FBgn0041210 Length:1269 Species:Drosophila melanogaster
Sequence 2:NP_741051.1 Gene:hda-5 / 174811 WormBaseID:WBGene00009663 Length:508 Species:Caenorhabditis elegans


Alignment Length:447 Identity:130/447 - (29%)
Similarity:204/447 - (45%) Gaps:77/447 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   840 GLAYDPLMLKHSCICGDN-AQHPEHSGRLQSVWARLNETDLVKRCDRLRARKATQEELQTVHTEA 903
            |..||..||.|.|..... |:.|:   |::.::.||.:..|:....::.||:|...|::..|.: 
 Worm     7 GYVYDERMLGHECKYDSTMAECPK---RMKLIYERLQKDKLLDGAVKIDAREANDSEIRLNHPQ- 67

  Fly   904 HAMLFGSNQCQLSRPKLENTLSASFVRLSCGGLGVDLDTTWNEHHTATAARMAAGCVIDLALKTA 968
                      ||    ::..:|.:... .|.....|.:..|...:|..|||:|.|..|:|.....
 Worm    68 ----------QL----IDEIVSLNSTE-KCEEYCKDKEILWTCENTNEAARVAIGGSIELVKAAM 117

  Fly   969 KGDLRNGFAVVRPPGHHAEANLAMGFCFFNSIAIAAKLLRQRMPEVRRILIVDWDVHHGNGTQQA 1033
            :|.:.||||:|||||||:...:|.|:|.||::|||||...::: ||:::.|||:|.|.||||.|:
 Worm   118 EGKIHNGFAMVRPPGHHSYGKVAQGYCIFNNVAIAAKYAIEKL-EVKKVAIVDFDYHAGNGTYQS 181

  Fly  1034 FYQSPDILYLSIHRHDDGNFFPGTGGPTECGSGAGLGFNVNISWSGALNPPLGDAEYIAAFRTVV 1098
            ......|...|.|.|..|.|:|.:.......:.....|   :..:|.:|   .:.:|::.|..|:
 Worm   182 VKDESRIHLTSFHGHHFGAFWPFSRDYDYATNSQNTLF---VPLNGTMN---SEGDYVSVFHHVL 240

  Fly  1099 MPIARSFNPDIVLVSSGFDAATGHPAPLGGYH---------VSPACFGFMTRELLQLANGKVVLA 1154
            :|:...|.|:::|:|:|||:         ||:         |....:|.|.|.|.|:..||::..
 Worm   241 LPMLEQFQPELILISAGFDS---------GYYDVMMEFGQGVKAHGYGHMARLLSQICPGKILAI 296

  Fly  1155 LEGGYDLAAICDSAQECVRALLGDPAAPIAKAELERPPCQNAINTLQKTIAIQQTHWPCVRMLEH 1219
            |||||......:||...||.||..|        |.|......|:.     |:.:|.|   .:|.|
 Worm   297 LEGGYHPYNYTESASMMVRGLLNLP--------LPRLDIPERISG-----ALLETTW---NILNH 345

  Fly  1220 ------TVGLSALETLK-VEHDESETINAMAGLSMQSMHRTLSRDDSEEPMDQDETK 1269
                  .:|    |.|| :||.:.|     .||...:..:|:...:....|..|..|
 Worm   346 HSEWYPKLG----ERLKLLEHQQKE-----LGLPQFAFDQTMFLGEKMRKMYDDMKK 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC4NP_001259507.1 ClassIIa_HDAC_Gln-rich-N 43..>87 CDD:421006
HDAC_classIIa 837..1211 CDD:212544 114/380 (30%)
hda-5NP_741051.1 HDAC10_HDAC6-dom1 19..350 CDD:212526 111/381 (29%)
Blue background indicates that the domain is not in the aligned region.

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