DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC4 and hdac4

DIOPT Version :9

Sequence 1:NP_001259507.1 Gene:HDAC4 / 32278 FlyBaseID:FBgn0041210 Length:1269 Species:Drosophila melanogaster
Sequence 2:XP_004917939.1 Gene:hdac4 / 100489340 XenbaseID:XB-GENE-488767 Length:1066 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC4NP_001259507.1 iSH2_PI3K_IA_R 43..>87 CDD:304922
HDAC_classIIa 837..1211 CDD:212544
hdac4XP_004917939.1 ClassIIa_HDAC4_Gln-rich-N 63..152 CDD:197398
HDAC4 637..1040 CDD:212530
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 457 1.000 Domainoid score I489
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 694 1.000 Inparanoid score I667
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D119187at33208
OrthoFinder 1 1.000 - - FOG0001001
OrthoInspector 1 1.000 - - otm49211
Panther 1 1.100 - - LDO PTHR48252
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X933
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.160

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