DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HDAC4 and HDAC5

DIOPT Version :9

Sequence 1:NP_001259507.1 Gene:HDAC4 / 32278 FlyBaseID:FBgn0041210 Length:1269 Species:Drosophila melanogaster
Sequence 2:XP_016879477.1 Gene:HDAC5 / 10014 HGNCID:14068 Length:1161 Species:Homo sapiens


Alignment Length:1278 Identity:451/1278 - (35%)
Similarity:639/1278 - (50%) Gaps:288/1278 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 IDQQIMELKKSQELQKQRLINSFQEQSKQMELEHKLQLE-HKYQKQPTNKRFSLELIVIIQFAVN 106
            :.|:::.||:.|:||||.|...||:|...:..:|::||: |..|:|        |::...|    
Human   115 LQQELLALKQQQQLQKQLLFAEFQKQHDHLTRQHEVQLQKHLKQQQ--------EMLAAKQ---- 167

  Fly   107 SHGAFQELRNESMVTAAAAAVAQEQHRQQLHQQQQQHQQQQQQQQHQQQQQQQQARGRDGMKLKQ 171
                     .:.|:.|         .|||..:||:|.:||:|::..:|:.:||....|:..|.|:
Human   168 ---------QQEMLAA---------KRQQELEQQRQREQQRQEELEKQRLEQQLLILRNKEKSKE 214

  Fly   172 NCSANASPEVKQILNCFILSRKSQAAASNGTTTTSPY-------RNRGVVKSSSGESLPAGTVTS 229
              ||.||.|||..|..|:|| ||:.....|...:.|.       .:..:.:||..:|.|.||..|
Human   215 --SAIASTEVKLRLQEFLLS-KSKEPTPGGLNHSLPQHPKCWGAHHASLDQSSPPQSGPPGTPPS 276

  Fly   230 AHPYKIPQPPPSLLKYES--DFPLRKTASEPNL-LKIRLKQSVIERKARIGGPAGARRHERLLQA 291
               ||:|.|.|    |:|  ||||||||||||| ::.||||.|.||::   .|...|:...::..
Human   277 ---YKLPLPGP----YDSRDDFPLRKTASEPNLKVRSRLKQKVAERRS---SPLLRRKDGTVIST 331

  Fly   292 AQRRQQK--------NSVLTNCNSTPDSGPNSPPSAAALAVGVVGSRGSPTSAPIQEENEEGSQY 348
            .::|..:        :||   |||.|.|||:||.|:.: .:...|..||..:.|        ::.
Human   332 FKKRAVEITGAGPGASSV---CNSAPGSGPSSPNSSHS-TIAENGFTGSVPNIP--------TEM 384

  Fly   349 QPGQR-----SSINDLPLFSSPSLPNISLGRPHLPNSAQAHAQVNAQVAAQAQAQAQAQAQAHAM 408
            .|..|     ||.|...|::||||||||||.........:|...:.:::.|.:|:.|        
Human   385 LPQHRALPLDSSPNQFSLYTSPSLPNISLGLQATVTVTNSHLTASPKLSTQQEAERQ-------- 441

  Fly   409 FAALAAAQGGCGQPGYYNPLGMAFVGRQPAPLAMIPATGIAPQQPSPVVRSASATSTSSSQASLV 473
             |..:..|||        .|...|:.....|..::   |:|          .....:....|||:
Human   442 -ALQSLRQGG--------TLTGKFMSTSSIPGCLL---GVA----------LEGDGSPHGHASLL 484

  Fly   474 GDV-APPQAHAASTILPSSSSYMQQLGSVAGSGVNLHAAAVAA----AAAAAAAAGSLPPTNSHG 533
            ..| ...||...||::                .|.||..:...    .|.:....|.||      
Human   485 QHVLLLEQARQQSTLI----------------AVPLHGQSPLVTGERVATSMRTVGKLP------ 527

  Fly   534 HGHGSHAHPHPHAHGHGHGHGHGIYAGHQHNVPITDAQVAQVHLHKQGHRPLGRTQSAPLPLGHP 598
                                                           .||||.||||:|||....
Human   528 -----------------------------------------------RHRPLSRTQSSPLPQSPQ 545

  Fly   599 MLTGAVQLNVVQTHYENSEAERQAYEHQVVNQKVRQTVLTRSGAAAAAAAAAGVSVVREAQLKEE 663
            .|.   ||.:.|.|.:..|.::|       .|.....:||::|                      
Human   546 ALQ---QLVMQQQHQQFLEKQKQ-------QQLQLGKILTKTG---------------------- 578

  Fly   664 DDDSAAEVMDLTDKKKPPKTVLTSTIATSTSQNLPEALAAAAAAAAYRAPHNASSNSASATKSGI 728
                        :..:.|     :|....|.:.|.|.........|...|...|:.|.| |:..:
Human   579 ------------ELPRQP-----TTHPEETEEELTEQQEVLLGEGALTMPREGSTESES-TQEDL 625

  Fly   729 KLRDQEYLQQQREQLLLLQQEE-----ELAKSLMRPLS--RTLSSPLVPLGPHGLSQIPDTGQQP 786
            :..|:|...::.|..:.::.||     |....|..|.:  :.|.|...||.|..:.|.|      
Human   626 EEEDEEDDGEEEEDCIQVKDEEGESGAEEGPDLEEPGAGYKKLFSDAQPLQPLQVYQAP------ 684

  Fly   787 APIATSSSADHIPPVNLSLPHRQHRQLMSTLYASQLRNHQPSASG---SPP-----HKVTTGLAY 843
                            |||....|:.|..|       ...|:|.|   |||     |..|||:.|
Human   685 ----------------LSLATVPHQALGRT-------QSSPAAPGGMKSPPDQPVKHLFTTGVVY 726

  Fly   844 DPLMLKHSCICGDNAQHPEHSGRLQSVWARLNETDLVKRCDRLRARKATQEELQTVHTEAHAMLF 908
            |..||||.|:||:...||||:||:||:|:||.||.|:.:|:|:|.||||.:|:||||:|.|.:|:
Human   727 DTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLSKCERIRGRKATLDEIQTVHSEYHTLLY 791

  Fly   909 GS---NQCQLSRPKLENTLSAS-FVRLSCGGLGVDLDTTWNEHHTATAARMAAGCVIDLALKTAK 969
            |:   |:.:|...||...:|.. :..|.|||:|||.||.|||.|:::|.|||.||:::||.|.|.
Human   792 GTSPLNRQKLDSKKLLGPISQKMYAVLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLLELAFKVAA 856

  Fly   970 GDLRNGFAVVRPPGHHAEANLAMGFCFFNSIAIAAKLLRQRMPEVRRILIVDWDVHHGNGTQQAF 1034
            |:|:||||::||||||||.:.|||||||||:||.||||:|:: .|.::||||||:||||||||||
Human   857 GELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLLQQKL-NVGKVLIVDWDIHHGNGTQQAF 920

  Fly  1035 YQSPDILYLSIHRHDDGNFFPGTGGPTECGSGAGLGFNVNISWSGALNPPLGDAEYIAAFRTVVM 1099
            |..|.:||:|:||:|:||||||:|.|.|.|.|.|:|:|||::|:|.::||:||.||:.|||||||
Human   921 YNDPSVLYISLHRYDNGNFFPGSGAPEEVGGGPGVGYNVNVAWTGGVDPPIGDVEYLTAFRTVVM 985

  Fly  1100 PIARSFNPDIVLVSSGFDAATGHPAPLGGYHVSPACFGFMTRELLQLANGKVVLALEGGYDLAAI 1164
            |||..|:||:||||:||||..||.:|||||.|:..|||.:||:|:.||.|:||||||||:||.||
Human   986 PIAHEFSPDVVLVSAGFDAVEGHLSPLGGYSVTARCFGHLTRQLMTLAGGRVVLALEGGHDLTAI 1050

  Fly  1165 CDSAQECVRALLGDPAAPIAKAELERPPCQNAINTLQKTIAIQQTHWPCVRMLEHTVGLSALETL 1229
            ||:::.||.|||.....|:.:|.|::.|..||:.||:|.|.||..||.||:.....:|.|..|..
Human  1051 CDASEACVSALLSVELQPLDEAVLQQKPNINAVATLEKVIEIQSKHWSCVQKFAAGLGRSLREAQ 1115

  Fly  1230 KVEHDESETINAMAGLSM--QSMHRTLSRDDS----EEPMDQD 1266
            ..|.:|:||::|||.||:  :......:|:.|    ||||:|:
Human  1116 AGETEEAETVSAMALLSVGAEQAQAAAAREHSPRPAEEPMEQE 1158

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC4NP_001259507.1 iSH2_PI3K_IA_R 43..>87 CDD:304922 17/44 (39%)
HDAC_classIIa 837..1211 CDD:212544 218/377 (58%)
HDAC5XP_016879477.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 448 1.000 Domainoid score I516
eggNOG 1 0.900 - - E1_COG0123
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 610 1.000 Inparanoid score I921
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG46994
OrthoDB 1 1.010 - - D119187at33208
OrthoFinder 1 1.000 - - FOG0001001
OrthoInspector 1 1.000 - - otm41987
orthoMCL 1 0.900 - - OOG6_100220
Panther 1 1.100 - - O PTHR48252
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2991
SonicParanoid 1 1.000 - - X933
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1514.870

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