DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mew and itga1

DIOPT Version :9

Sequence 1:NP_001285196.1 Gene:mew / 32275 FlyBaseID:FBgn0004456 Length:1243 Species:Drosophila melanogaster
Sequence 2:XP_021334930.1 Gene:itga1 / 570868 ZFINID:ZDB-GENE-091118-115 Length:1183 Species:Danio rerio


Alignment Length:1391 Identity:325/1391 - (23%)
Similarity:513/1391 - (36%) Gaps:497/1391 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 LGILIILQCVLTCYNFNLEQRLPIVKYGHPHSHFGYSVATHTIGEANGPNKTNCVLVGAPLDQNR 83
            |..|:.|...|:|:|.:.:.|:..  .|.....|||:|......|.      ..||:|:||  ..
Zfish    10 LAALLALLPWLSCFNVDEKNRMSF--SGPVEDMFGYTVQQFENSEG------KWVLIGSPL--TG 64

  Fly    84 QPNTTHSGALWRCPMTQRFDD-CEQVITDGRRNFDSEILSPPGNDEIKEDQWMGVTVRSNPLQAN 147
            || ...:|.::||.:....|. ||:.:.       ||..:.|..:|:||:..||.|:..||   :
Zfish    65 QP-AKRTGDVYRCRVGSNSDSKCEKFLL-------SENTTIPNINEVKENMTMGTTLVVNP---D 118

  Fly   148 GSGGKVIVCAHRYMYIVRENRYGQGLC------YLLTNDL------------------------- 181
            |:|  .:.|..:|.|:..:.:|..|:|      :.:.|.:                         
Zfish   119 GNG--FLACGPQYGYMCGKQQYITGICSNVSSSFKVLNSIAPTVRECSQDMDIVIVLDGSNSIYP 181

  Fly   182 --------------------------------------QFEEVHEPCKGRPVQRQ---------- 198
                                                  ||....|..|.....||          
Zfish   182 WDHITDFLVKFLQNIEIGPARVGIVSYGDDVGHVFNLSQFSNTKELVKNAADIRQRTGHKTMTAL 246

  Fly   199 --------------------------------HEDYGL------CQAG----TSAALLDD----- 216
                                            |:.:.|      ||..    .:.|:|.|     
Zfish   247 GIDTARKEAFTVERGARPGVKKVMVIVTDGESHDHHNLKSVIDQCQEDGIERFAVAVLGDYNRQN 311

  Fly   217 --------------------------------------DTM------------------------ 219
                                                  ||:                        
Zfish   312 KSIDEIKKFIEEIEYIASETKSDHFFNVSDERALVTIVDTLGSKIFALEATSGKHTSSFEMEMSQ 376

  Fly   220 ------------VLGSPGPYTWRGSIWVTQVGGEYLQRDKTTYYSDHSDLNSPVDKY----SYLG 268
                        :||:.|.:.|.|:: |.|.|.|::...|.|::      |..|.:|    .|:|
Zfish   377 AGFSAHTSKAGVMLGAVGAFDWNGTV-VMQAGNEFVVPKKNTFH------NPSVQRYEGMAGYVG 434

  Fly   269 MSVTGGRFFGHMSYAAGAPRSEGHGQVVIFDKSTDNPIPVHSILDGEQFGSSFGYELATADINGD 333
            ..|........:.|..||||....|:|.::....:| :.:...|.|||.||.||..|.|.||:||
Zfish   435 YDVQSAYTPNGVLYITGAPRFNHSGRVTVYRFDGEN-VTIVQTLKGEQIGSYFGSVLQTHDIDGD 498

  Fly   334 HRPD-LIVAAPLYF--TKTEGGAVYVYQ-NIQDTLPMKYTLKLTG-------------------P 375
            :..| |:||||::.  .:.|.|.||||: |.......:.|||...                   |
Zfish   499 NYTDILLVAAPMFMGPERDEQGQVYVYKLNESGLFEHEMTLKPVNQTCCSGHSHNNCKIVSKNEP 563

  Fly   376 LESRFGLALANIGDLNKDNCEDLAVGAPYEGN--GVVYIYLGSSQGLNSKPAQKIQASELGGTIP 438
            ..:|||.|:|.:.|||.|...|:.:|:|.|.:  |.||||.||.:.:..|..|:|.|   ||   
Zfish   564 CGARFGTAIAAVPDLNLDKFSDIVIGSPLENDHRGAVYIYHGSQKSIKEKYVQRIAA---GG--- 622

  Fly   439 NGQPIRTFGISISGNTDLDDNSYPDVVIGAFNSSA------AVILLAR----PI-ISIQTSVQRK 492
            :|:.::.||.||.|..||:|:...||.||....:|      ...|||.    || |::|.:.|  
Zfish   623 DGESMKFFGQSIHGIMDLNDDGIIDVTIGGIGGAALYWSRDVAELLAEMTFDPIKINLQHTCQ-- 685

  Fly   493 ELHNMDPNTPGCLDDPASNLTCFTFRACCSIEPYDEKNKELRLAYSVEAETFDHLKKFSRVFFFD 557
             :|.   .|..|:    ....||.:|    |:...|.|....:.||:   |.|.|:..:|..|.:
Zfish   686 -VHG---KTTVCV----KTRVCFKYR----IKSVKEMNTGTVIRYSL---TLDSLRAVARGRFNE 735

  Fly   558 RENKR----TNVLSRVVRVHTNGRTECQAVTGYIKANTRDIQTPVRFRLKYSLVEP---PLADSA 615
            .|::|    .::.::..|.||           :..::..|.:.|:...|::.|.:.   |:.|. 
Zfish   736 TEDRRLQKNESIRNKFCREHT-----------FYTSDKLDFRDPIMVTLEFGLADEDKGPVLDG- 788

  Fly   616 LVRLNPILDQTQAHVDFEGTFQKDCGDDDLCESNLIIRVEPNITESSGNEYTLIL--DETELEVR 678
              .|...|::|.|.|        |||.::.|.:||.::...||:       :|::  ::.:..|.
Zfish   789 --ELPTSLNKTIALV--------DCGSNEKCVANLHLQASANIS-------SLLIKSNQEKFYVN 836

  Fly   679 INVSNLADSAYEAQLFIAHQAGVSYVATKKPTNATCNSYNTTLVACSLGNPML--RDTTTFVTIR 741
            |::.|..|:||..::.::|...::||.. :|.:..|.: |.|.:.|::|.|.|  :|..|| .|:
Zfish   837 IDIKNTGDNAYNTKVTLSHTENINYVKV-EPKDKDCET-NHTRIVCAVGYPFLKTKDRETF-KIQ 898

  Fly   742 FQPKGLEPS--EKIMLFHIFANTTSKLVGPERPERDLRVNVVRRAKLNFRGWAIPEQSFYSGSSV 804
            |:|   .||  .|.::.::.|.|.|     |:.:..|        |.||....||.:...|....
Zfish   899 FEP---NPSLIRKDIVINVTATTDS-----EQSDSAL--------KRNFETIIIPVRHEASMRFT 947

  Fly   805 AN-----------------SVANTAATDIEGHGPMGMDDVGSQVHHMFTIFNEGPSTAPKVQMVI 852
            ||                 ||.|..:.            :|.:|...:||..:....:|.|::.|
Zfish   948 ANKYMKEDHIILKEKETIPSVFNHTSV------------IGDEVKISYTIEKDPDMPSPPVKLTI 1000

  Fly   853 HWPYSLYSDPQSGRPVQYLLYLEQVPTVEVSQG-ECHVAKEYVNPLNLASGSRENPAYLSAPAQM 916
            .:||...:.       .:||||..   :..:.| .|  :.:::|||.:.                
Zfish  1001 MFPYQTSAK-------NFLLYLTD---LSYTAGIRC--SADWINPLKIQ---------------- 1037

  Fly   917 RMFPSQSRHSFNKSLIHSQRSYYSSSHRDDHSDDTQSNRNRVRRSFLERVTRLERLMYDPESSNA 981
               ||:. ||.|                                      |:.|.|         
Zfish  1038 ---PSKP-HSLN--------------------------------------TKKETL--------- 1051

  Fly   982 ANGKKQDIVELDCNKGATNCVRIECDILNMPALSEAQVVVKARLWNSTLVSEYPRVERVRIFSTA 1046
                  .|..|.|.:....|....|.|   |:....|:....|||..|.:    :.|...|....
Zfish  1052 ------SIYLLSCKEKENPCQSFSCFI---PSGDFNQINTTFRLWRPTFI----KGEFSTIHMAV 1103

  Fly  1047 TAQI-PESYGVEVMDHNNIEVETRAYPELRNQ-QRD--TSIPWLIIILGIVGGLLLLALVTYVLW 1107
            .|:: .::..:.|::.|   ::||   |:|.| .:|  |.||..||||.|:.|||:||||.:.||
Zfish  1104 DAKLETQNTDLFVLNEN---IKTR---EVRIQVTKDIRTGIPLWIIILSILIGLLILALVIFALW 1162

  Fly  1108 KVGFFKRIRPTDPTLSGNLEKMNEEK 1133
            |.|||||         .::|:|||:|
Zfish  1163 KAGFFKR---------KSVEEMNEDK 1179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mewNP_001285196.1 Int_alpha 48..111 CDD:214549 18/63 (29%)
Int_alpha 317..368 CDD:214549 23/54 (43%)
Int_alpha 378..428 CDD:214549 22/51 (43%)
Int_alpha 446..491 CDD:214549 20/55 (36%)
Integrin_alpha2 479..1006 CDD:285619 119/562 (21%)
itga1XP_021334930.1 vWFA 167..348 CDD:320736 13/180 (7%)
Int_alpha 482..532 CDD:214549 23/49 (47%)
Int_alpha 565..618 CDD:214549 22/52 (42%)
Integrin_alpha2 661..1070 CDD:312071 121/570 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574976
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.740

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