DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mew and itga6b

DIOPT Version :9

Sequence 1:NP_001285196.1 Gene:mew / 32275 FlyBaseID:FBgn0004456 Length:1243 Species:Drosophila melanogaster
Sequence 2:NP_001013466.1 Gene:itga6b / 541320 ZFINID:ZDB-GENE-050320-5 Length:1085 Species:Danio rerio


Alignment Length:1212 Identity:350/1212 - (28%)
Similarity:531/1212 - (43%) Gaps:267/1212 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 LGILIILQCVLTCYNFNLEQRLPIVKYGHPHSHFGYSVATHTIGEANGPNKTNCVLVGAPLDQ-- 81
            ||:.:|..       |||:....|.|.|..:|.||:|:|.|   ....|.....:|||:|..:  
Zfish    15 LGLTLISA-------FNLDTVNVIRKTGDANSLFGFSMAMH---RQLRPADKRMLLVGSPKAKAL 69

  Fly    82 -NRQPNTTHSGALWRCPMTQRFDDCEQVITDGRRNFDSEILSPPGNDEIKEDQWMGVTVRSNPLQ 145
             |::...|  |.|:.|.:......|::|:.|...|..:         |.||:|||||||     |
Zfish    70 PNQRSKIT--GGLYNCDINIPGQSCQRVMFDNEENLQT---------ENKENQWMGVTV-----Q 118

  Fly   146 ANGSGGKVIVCAHRY---MYI--VRENRYGQGLCYLLTNDLQFEEVHEP-------CKGRPVQRQ 198
            :.|.|||::||||||   :::  |:|.|...|.||:|:.|:...|:.:.       |.||  .|.
Zfish   119 SQGPGGKILVCAHRYQRRLFVGSVQELRDLTGRCYVLSEDVTINEISDEDGGDWMFCNGR--NRG 181

  Fly   199 HEDYGLCQAGTSAALLDD-DTMVLGSPGPYTWRGSIWVTQVGGEYLQR---DKTTY-YSDHSDLN 258
            ||.:|.||.|.||....| ..:|.|:||.|.|:|.:.:.|.......:   |...| ..|.:.|:
Zfish   182 HERFGSCQQGMSATFTKDYHYLVFGAPGAYNWKGIVRLEQKNTSLFDKDIFDDGPYEVGDENRLD 246

  Fly   259 S---PVDKYSYLGMSVTGGRFF---GHMSYAAGAPRSEGHGQVVIF--DKSTDNPIPVHSILDGE 315
            :   ||...||||.|:..|:..   |.::..|||||:...|.||:.  |::..:.:.....|:|.
Zfish   247 AELVPVPANSYLGFSLDSGKMLTKRGQLTIVAGAPRANHSGAVVLLKKDEAKSSLLTAEYTLEGS 311

  Fly   316 QFGSSFGYELATADINGDHRPDLIVAAPLYFTKTE--GGAVYVYQNIQDTLPMKYTLKLTGPLES 378
            ...|||||:||..|||||...|::|.||.||.|..  |||:|||.|.:.........::.||..|
Zfish   312 GLASSFGYDLAVLDINGDGWQDIVVGAPQYFIKDGDIGGAIYVYLNEEGAWDKITPKRIDGPAYS 376

  Fly   379 RFGLALANIGDLNKDNCEDLAVGAPYEGNGV--VYIYLGSSQGLNSKPAQKIQASELGGTIPNGQ 441
            .||||:.|:||:|.|..:|:||.|||:.||.  |.|:.||.|||.       ::..|||...|  
Zfish   377 MFGLAVENMGDVNLDGYQDVAVSAPYDSNGAGNVIIFHGSPQGLK-------KSQVLGGKDHN-- 432

  Fly   442 PIRTFGISISGNTDLDDNSYPDVVIGAFNSSAAVILLARPIISIQTSVQR--KEL----HNMDPN 500
             ::.||.|::||.|||.|:|||:.||:. |.:..:..:|.:|:|:.:|..  |||    .|.:..
Zfish   433 -VKLFGYSLAGNMDLDRNNYPDLAIGSL-SDSVFVYRSRSVINIEKTVTTTPKELDLTKKNCNNG 495

  Fly   501 TPGCLDDPASNLTCFTFRACCSIEPYDEKNKELRLAYSVEAETFDHLKKF---SRVFFFDRENKR 562
            ...|||..|    ||.|    |::| ...|..|::||::..|:  ..||.   |||.|..|.|..
Zfish   496 NNICLDVKA----CFKF----SVKP-KTYNPTLKVAYTIRVES--ERKKLNLPSRVIFNPRSNND 549

  Fly   563 TNVLSRVVRVHTNGRTECQAVTGYIKANTRDIQTPVRFRLKYSLVEPPL----------ADSALV 617
            .. .:.:|.:...|...|      |..|.. :|..::.:|:...:|..:          ..:||.
Zfish   550 YE-STGIVELKGQGTESC------IYRNLM-LQETLKDKLRGIPIEVSVEILNQNKRRRRQAALP 606

  Fly   618 RLNPILDQTQ-----AHVDFEGTFQKDCGDDDLCESNLIIRV-----EPN------ITESSGNEY 666
            .|.||||..|     |.|.|   .::.||.|.||:|:|.::.     |||      ..|..|...
Zfish   607 NLLPILDSNQEATTVAMVQF---IKEGCGADHLCQSDLQLQYKFHTREPNKDNFFPFDEEKGVPI 668

  Fly   667 TLILDETELEVRINVSNLADSAYEAQLFIAHQAGVSYVATK-----KPTNATCNSYNTTLVACSL 726
            ..:.|:.|:.:.|...||.:.|||.||..:....:||.|.:     |..:...|. |.:...|.|
Zfish   669 LSLSDQKEIALEIKAVNLGEDAYETQLTASFPKSLSYSAVRTQSGDKQISCLVNQ-NGSQADCDL 732

  Fly   727 GNPMLRDTTTFVTIRFQPKGLEPSEKIMLFHIFANTTSKLVGPERPERDLRVNVVRRAK------ 785
            |||..:|..|                  .|:|..:|....:.....|.||::......|      
Zfish   733 GNPFKKDAQT------------------TFYIILSTGGISLDTTEIEIDLKLKTTSEQKQLQAVK 779

  Fly   786 ----------LNFRGWAIPEQSFYSGSSVANSVANTAATDIEGHGPMGM-DDVGSQVHHMFTIFN 839
                      |:..|.|.|.|.|::|             :::|...|.: .||||.:.:.|.:.|
Zfish   780 AKAIVKIQLLLSLSGVAKPSQVFFTG-------------EVKGESAMKVAGDVGSPIDYEFRVTN 831

  Fly   840 -EGP-STAPKVQMVIHWPYSLYSDPQSGRPVQYLLYLEQVPTVEVSQGECHVAKEYVNPLNLASG 902
             :.| .:..:..|:|.|       |:.....::||||.::.:..:....|..:.| ||.|.|...
Zfish   832 LDKPLKSFGRASMIIQW-------PKHNSQGKWLLYLMKMTSTGLDSLSCTNSDE-VNKLGLKEL 888

  Fly   903 SRENPAYLSAPAQMRMFPSQSRHSFNKSLIHSQRSYYSSSHRDDHSDDTQSNRNRVRRSFLERVT 967
            |                                                              |:
Zfish   889 S--------------------------------------------------------------VS 891

  Fly   968 RLERLMYDPESSNAANGK------KQDIVELDCNKGATNCVRIECDILNMPALSEAQVVVKARLW 1026
            |.:|   :...::||.||      |:....|.|:.|| .|:...|.:..|.  |.|.:.::|.||
Zfish   892 RTKR---EVGETSAAEGKTAFFTDKRKYTLLSCDDGA-ECITFICPLTGMD--SNAVISLRAYLW 950

  Fly  1027 NSTLVSEYPRVERVRIFSTATAQIPESYGVEVMDHNNIEVETRAYPELRNQQRDTSIPWLIIILG 1091
            |:|.:.:|.::..|.|.:.|:.....:.....:.:...:|....:|| |...:...:||.:|::.
Zfish   951 NATFLEDYAKLNYVDIIAKASLDFKTTATNIQLKNEPSQVRVTVFPE-RKVAQYGGMPWWVILVA 1014

  Fly  1092 IVGGLLLLALVTYVLWKVGFFKRIRPTDPTLSGNLEKMNEEK 1133
            |:.|||||.|:.::|||.|||||.:..|...|.|..::..|:
Zfish  1015 ILLGLLLLGLLVFLLWKCGFFKRSKYDDSVPSYNAVRIKREE 1056

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mewNP_001285196.1 Int_alpha 48..111 CDD:214549 18/65 (28%)
Int_alpha 317..368 CDD:214549 26/52 (50%)
Int_alpha 378..428 CDD:214549 25/51 (49%)
Int_alpha 446..491 CDD:214549 19/44 (43%)
Integrin_alpha2 479..1006 CDD:285619 135/591 (23%)
itga6bNP_001013466.1 Int_alpha 37..98 CDD:214549 18/65 (28%)
Int_alpha 254..>292 CDD:214549 15/37 (41%)
Int_alpha 315..365 CDD:214549 26/49 (53%)
Int_alpha 374..425 CDD:214549 25/57 (44%)
Integrin_alpha2 468..932 CDD:285619 135/591 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 130 1.000 Domainoid score I5161
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 401 1.000 Inparanoid score I1884
OMA 1 1.010 - - QHG46425
OrthoDB 1 1.010 - - D325432at33208
OrthoFinder 1 1.000 - - FOG0001200
OrthoInspector 1 1.000 - - otm26039
orthoMCL 1 0.900 - - OOG6_102503
Panther 1 1.100 - - O PTHR23220
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2587
SonicParanoid 1 1.000 - - X929
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.870

Return to query results.
Submit another query.