DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mew and itga6a

DIOPT Version :9

Sequence 1:NP_001285196.1 Gene:mew / 32275 FlyBaseID:FBgn0004456 Length:1243 Species:Drosophila melanogaster
Sequence 2:XP_005167466.1 Gene:itga6a / 503893 ZFINID:ZDB-GENE-050309-23 Length:1092 Species:Danio rerio


Alignment Length:1204 Identity:352/1204 - (29%)
Similarity:543/1204 - (45%) Gaps:256/1204 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 FNLEQRLPIVKYGHPHSHFGYSVATHTIGEANGPNKTNCVLVGAPLDQ---NRQPNTTHSGALWR 95
            |||:.:..:.|.|.|.|.||:|:|.|   ....|:....:|:|||..:   |:..|.|  |.|:.
Zfish    26 FNLDTQNVLRKSGQPGSLFGFSIALH---RQLQPHDKTILLIGAPKARALSNQGANVT--GGLYS 85

  Fly    96 CPMTQRFDDCEQVITDGRRNFDSEILSPPGND---EIKEDQWMGVTVRSNPLQANGSGGKVIVCA 157
            |.:|...:||.:|      :||:::      |   |.||:|||||||     |:.|.|||::.||
Zfish    86 CDITTHPNDCSRV------DFDNDV------DVRVENKENQWMGVTV-----QSQGPGGKIVTCA 133

  Fly   158 HRYMYIV-----RENRYGQGLCYLLTNDLQFEEVHEP-------CKGRPVQRQHEDYGLCQAGTS 210
            |||..::     :|.|...|.||:|:.||..:...:.       |.||  .|.||.:|.||.|.:
Zfish   134 HRYQRLLFPNTPQEARDITGRCYMLSQDLSIDNQSDEDGGNWKFCDGR--TRGHERFGACQQGLA 196

  Fly   211 AALLDD-DTMVLGSPGPYTWRGSIWVTQVGGEYLQR---DKTTY-YSDHSDLNS---PVDKYSYL 267
            |....| ..::.|:||.|.|:|.:.:.|.....|:.   |...| ..|.:.|:.   ||...|||
Zfish   197 ATFTKDYHYVIFGAPGAYNWKGIVRIEQKNNTLLEMGLFDDGPYEVGDENRLDPNLVPVPANSYL 261

  Fly   268 GMSVTGGRFF---GHMSYAAGAPRSEGHGQVVIFDKS---TDNPIPVHSILDGEQFGSSFGYELA 326
            |.|:..|...   |.:...:||||:...|.||...|.   :....|.| ||:|....|||||::|
Zfish   262 GFSLDSGHSITEKGKLIIVSGAPRANHSGAVVFLRKEGELSSMLTPEH-ILEGPGLASSFGYDVA 325

  Fly   327 TADINGDHRPDLIVAAPLYFTKTE--GGAVYVYQN----IQDTLPMKYTLKLTGPLESRFGLALA 385
            ..|:|||...|::|.||.:|.:.|  |||||||.|    .:|..|    ::|.|..:|.|||::.
Zfish   326 VVDLNGDGWQDVVVGAPQFFQRDEEVGGAVYVYINKAGRWRDVTP----VRLNGTKDSMFGLSVE 386

  Fly   386 NIGDLNKDNCEDLAVGAPY--EGNGVVYIYLGSSQGLNSKPAQKIQASELGGTIPNGQPIRTFGI 448
            ||||:|.|:.||:||||||  .|.|.||||.||:.|:::||||.::..:        ...:.||.
Zfish   387 NIGDVNLDSFEDIAVGAPYADSGFGSVYIYHGSADGISTKPAQILEGKQ--------HNTKMFGY 443

  Fly   449 SISGNTDLDDNSYPDVVIGAFNSSAAVILLARPIISIQTSVQ--RKELHNMDPNTPGCLDDPASN 511
            |::||.|||.|||||:.:|:. |....|..::.:|||:..::  .||: ::...|.|       |
Zfish   444 SLAGNMDLDHNSYPDLAVGSL-SDTVFIYRSKNVISIKKDIKVTPKEI-DLTKKTCG-------N 499

  Fly   512 LTCFTFRACCSIEPYDEK-NKELRLAYSVEAETFDH-LKKFSRVFFFDR-----ENKRTNVLSRV 569
            ..|.|..||.|....... |.::.::.:.|||.:.. |...|||.|.|:     :.:.|..|   
Zfish   500 SICLTVEACFSYRANPTTYNPKITISCTFEAEWYRRKLGLPSRVVFLDKTEIDQDYQSTGTL--- 561

  Fly   570 VRVHTNGRTECQAVTGYIKANTRDIQTPVRFRLKYSLVEPPLA---------DSALVRLNPILD- 624
             .:....:..|      .|...| :|..:|.:|:...:|..:|         .|:|.:|.|||| 
Zfish   562 -ELRGQNKKAC------YKTKLR-LQDGIRDKLRAIPIEVSVAIQSAKRGKRQSSLPQLVPILDS 618

  Fly   625 ----QTQAHVDFEGTFQKDCGDDDLCESNLIIR-----------VEPNITESSGNEYTLILDETE 674
                :|...|:|   .::.||.|::|:|||.::           :.|.:...:|.....:.|:.:
Zfish   619 TVPNKTLTEVNF---LKEGCGTDNICQSNLNLQYRFCYRESKQDIFPPLPLENGVPVISLSDQKD 680

  Fly   675 LEVRINVSNL-ADSAYEAQLFIAHQAGVSY-----VATKKPTNATCNSYNTTLVACSLGNPMLRD 733
            :.:.:.|.|. .|.|:||:|.......:||     :.|.........:.|.:|..|.||||..||
Zfish   681 IALEVTVRNRNGDDAHEAKLVSHFDDSLSYSGFRSLRTNDKHVICAANQNGSLADCELGNPFKRD 745

  Fly   734 T-TTFVTIRFQPK-GLEPSEKIMLFHIFANTTSKLVGPERPERDLRVNVVRRAKLNFRGWAIPEQ 796
            : .||..|....| .||..|  :...:...|||...|..:.:  .:..||....|:.:|.|.|.|
Zfish   746 SEVTFYIILSTGKISLETKE--VEIDLQLETTSSQEGLSKVK--AKAKVVIELLLSVQGVAKPSQ 806

  Fly   797 SFYSGSSVANSVANTAATDIEGHGPMGM-DDVGSQVHHMFTIFNEGP-----STAPKVQMVIHWP 855
            .::.|             :::|...|.. ::|||.:.:.|.:.|.|.     .||   .:.|.||
Zfish   807 VYFGG-------------EVKGMSAMKKEEEVGSLIEYEFRVINLGKPLKSFGTA---SLNIQWP 855

  Fly   856 YSLYSDPQSGRPVQYLLYLEQVPTVEVSQGECHVAKEYVNPLNLASGSRENPAYLSAPAQMRMFP 920
                .:...|:   :||||.::.|.::....|...:| :|||.|                     
Zfish   856 ----KESSVGK---WLLYLMKINTRDLQLVTCSPERE-INPLKL--------------------- 891

  Fly   921 SQSRHSFNKSLIHSQRSYYSSSHRDDHSDDTQSNRNRVRRSFLERVTRLERLMYDPESSNA---- 981
                                   |:|.|       .|.:|...||         .|...|.    
Zfish   892 -----------------------REDSS-------IRKKRELEER---------RPSEGNKISLF 917

  Fly   982 ANGKKQDIVELDCNKGATNCVRIECDILNMPALSEAQVVVKARLWNSTLVSEYPRVERVRIFSTA 1046
            .:.:|..|  |.|: |...||.|:|.:..:.  |.|.:|:|:||||||.:.::.....:.|...|
Zfish   918 TDKRKHKI--LSCS-GDARCVEIKCPLQGLD--STAVIVLKSRLWNSTFLEDFASYNYLDIIVKA 977

  Fly  1047 TAQIPESYGVEVMDHNNIEVETRAYPELRNQQRDTS-----IPWLIIILGIVGGLLLLALVTYVL 1106
            :..:..|....|:.:...:|....:||      .|:     :||.||::.::.|:|:|||:..:|
Zfish   978 SISLDVSAKNIVLKNPETQVRLTVFPE------TTATPFGGVPWWIILVAVLAGILMLALLVLLL 1036

  Fly  1107 WKVGFFKRIRPTDPTLSGNLEKMNEEKPFLAPSK 1140
            ||.|||||.:..|.....:..::.:|...|...|
Zfish  1037 WKCGFFKRSKYEDSVPKYHAVRIRKETRLLKDGK 1070

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mewNP_001285196.1 Int_alpha 48..111 CDD:214549 22/65 (34%)
Int_alpha 317..368 CDD:214549 26/56 (46%)
Int_alpha 378..428 CDD:214549 31/51 (61%)
Int_alpha 446..491 CDD:214549 19/46 (41%)
Integrin_alpha2 479..1006 CDD:285619 133/578 (23%)
itga6aXP_005167466.1 Int_alpha 40..101 CDD:214549 22/71 (31%)
Int_alpha 257..>293 CDD:214549 12/35 (34%)
Int_alpha 318..368 CDD:214549 24/49 (49%)
Int_alpha 378..431 CDD:214549 31/52 (60%)
Int_alpha 440..>463 CDD:214549 13/22 (59%)
Integrin_alpha2 476..939 CDD:285619 133/575 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 130 1.000 Domainoid score I5161
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H20091
Inparanoid 1 1.050 401 1.000 Inparanoid score I1884
OMA 1 1.010 - - QHG46425
OrthoDB 1 1.010 - - D325432at33208
OrthoFinder 1 1.000 - - FOG0001200
OrthoInspector 1 1.000 - - otm26039
orthoMCL 1 0.900 - - OOG6_102503
Panther 1 1.100 - - O PTHR23220
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2587
SonicParanoid 1 1.000 - - X929
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1514.870

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