DRSC/TRiP Functional Genomics Resources

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Protein Alignment mew and ItgaPS4

DIOPT Version :9

Sequence 1:NP_001285196.1 Gene:mew / 32275 FlyBaseID:FBgn0004456 Length:1243 Species:Drosophila melanogaster
Sequence 2:NP_611025.2 Gene:ItgaPS4 / 36693 FlyBaseID:FBgn0034005 Length:1069 Species:Drosophila melanogaster


Alignment Length:1187 Identity:284/1187 - (23%)
Similarity:477/1187 - (40%) Gaps:270/1187 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 ILIILQCVLTCYNF----NLEQRLPIVKYGHPHSHFGYSVATHTIGEANGPNKTNCVLVGAPLDQ 81
            :|:.||..:..||.    |.....|.::.....|:||:|:..          :...::|.||...
  Fly     8 VLLALQSEINAYNISPYPNSVLNFPELEGNRRSSYFGFSLVI----------REKSIMVAAPRAN 62

  Fly    82 N---RQPNTTHSGALWRCPMTQRFDDCEQVITDGRRNFDSEILSPPGNDEI-----KEDQWMGVT 138
            :   .|.|.:..|.::|| ..:..::|.....|.:.|:..   .|  ||.:     |:.:|:|..
  Fly    63 SSLEAQRNISEPGVIFRC-YFESGNNCSPYNIDTKGNYKG---MP--NDGLLTAKNKDFRWLGGA 121

  Fly   139 VRSNPLQANGSGG-----KVIVCAHRYMYIVRENRYGQGLCYLLTN---DLQFEEVHEPCKGRPV 195
            :         .||     |.:|||.|:..|..||.|..|:||.|::   ::...||.|....|..
  Fly   122 M---------DGGTRDSDKFLVCAPRFYSINNENDYNNGMCYWLSDTPKNIDSTEVMEKWPLRIE 177

  Fly   196 QRQ---------HEDYGLCQAGTSAALLDDDT-MVLGSPGPYTWRGSIWVTQVGGEYLQRDKTTY 250
            ::|         ...|.:.:.|.||.:.||:: :::|:||...|:||:.:.|    .:...||:.
  Fly   178 KKQVLKLADTNLIPYYSMGELGLSAHVSDDNSKLLMGAPGIDQWKGSVHLKQ----EVPSIKTSS 238

  Fly   251 YSDHSDLN--------SPVDK------YSYLGMSVTGGRF----FGHMSYAAGAPRSEGH-GQVV 296
            ......:|        :|..|      :||.|.:|:.|.|    ...:.|.|.|||.... |:..
  Fly   239 GRQRRGMNTNRKCNECNPEPKNFGQEEFSYFGYAVSSGYFDSSNLSTVLYVATAPRGNNQFGEAY 303

  Fly   297 IFDKSTDNPIPVHSILDGEQFGSSFGYELATADINGDHRPDLIVAAPLYFTKT--EGGAVYVYQN 359
            |||...|:....|. ..|..||..|||.:...|:|||.:.|:|::||||..:.  :.||:||:.|
  Fly   304 IFDIYEDSIYKYHE-FRGNHFGEYFGYSVLAEDLNGDGKTDVIISAPLYALRNSYDDGAIYVFIN 367

  Fly   360 IQDTLPMKYTLK---LTGPLES--RFGLALANIGDLNKDNCEDLAVGAPYEGNGVVYIYLGSSQG 419
                 ...:|.:   :..|..|  |||..|:.|||:|||...|:|||||:.|||.|:|||||..|
  Fly   368 -----KGSFTFEERIIRSPAGSGGRFGTTLSRIGDINKDGYNDVAVGAPFAGNGSVFIYLGSENG 427

  Fly   420 LNSKPAQKIQASELGGTIPNGQPIR----TFGISISGNTDLDDNSYPDVVIGAFNSSAAVILLAR 480
            |...|:|.:.|       |:.||.:    .||..:|..:|:|.|.:.|..|||.|:.|..:..|.
  Fly   428 LRDPPSQCLDA-------PSQQPSKYGSYMFGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLYRAY 485

  Fly   481 PIISIQTSVQRKELHNMDPNTPGCLDDPASNLT-CFTFRACCSIEPYDEKNK---ELRLAYSVEA 541
            |::.|...::.| |.|::|      ::...|:| |:...:     ..|.|.|   |..|...::.
  Fly   486 PVVKIHAIIKPK-LQNVNP------EEERVNITVCYRLSS-----KSDSKAKALMEQELVIRIDI 538

  Fly   542 ETFDHLKKFSRVFFFDRENKRTNVLSRVVRVHTNGRTECQAVTGYIKANTRDIQTPVRFRLKYSL 606
            :|...:|    :..||.|: .:.:..:....|....:|.|     |:.:.|...||:...::|.|
  Fly   539 DTKSKIK----LAVFDEEH-GSQMSFKAKAFHEEICSEFQ-----IEMDKRAKFTPIALEMQYEL 593

  Fly   607 VEPPLADSALVRLNPILDQTQAHVDFEG-TFQKDCGDDDLCESNLIIRVEPNITESSGNEYTLIL 670
            .:.............::|..:.....|. ||...|. .|:|.::|.|..   |..||    ||:|
  Fly   594 SKKIPNSGDFCEDCAVVDPAEPKFVTEYITFNTGCA-TDVCVADLKISC---INASS----TLVL 650

  Fly   671 DETE-LEVRINVSNLADSAYEAQLFIAHQAGVSYVATKKPTNATCNSYNTTLVACSL--GNPMLR 732
            ..|. |.:..|::|..:.||..:..:.:.||:|  ..:.|.|.   ..|..::.|.|  |..|.:
  Fly   651 GTTAVLRLTYNITNNGEFAYHPKFSVTNSAGLS--LAQVPGNC---KVNEAVMVCDLNHGQRMAK 710

  Fly   733 DTTTFVTIRFQPKGLEPSEKIMLFHIFANTTSKLVGPERPERDLRVNVVRRAKLNFRGWAIPEQS 797
            ..|..:||.|..:.|.                        .|.|.   ::...|:.|..:.||  
  Fly   711 GDTDSLTISFDVRQLR------------------------GRSLE---IQAEVLSARDESNPE-- 746

  Fly   798 FYSGSSVANSVANTAATDIEGHGPMGMDDV-------GSQVHHMFTIFNEGPSTAPKVQMVIHWP 855
               .:.:.|.::.....||...|....|.|       .::|.:.:.|.:.||||...:.:.::.|
  Fly   747 ---NNKLTNVLSLREKADIYVSGVQTNDHVVLKESPYTAEVVNYYEIKSHGPSTLENLTVSLYIP 808

  Fly   856 YSLYSDPQSGRPVQYLLYLEQVPTVEVSQGECHVAKEYVNPLNLASGSRENPAYLSAPAQMRMFP 920
            .: |..|.|.. |::::    ..:.::.....|    .:.|:|                    |.
  Fly   809 VA-YKTPDSTN-VKHIV----TSSPKIQSKYAH----KIMPIN--------------------FI 843

  Fly   921 SQSRHSFNKSLIHSQRSYYSSSHRDDHSDDTQSNRNRVRRSFLERVTRLERLMYDPESSNAANGK 985
            .|:....|...|...:|....|....|                |.|..|..::....|.:..|  
  Fly   844 DQNNALANNFAIDHDQSTLLFSATPQH----------------ENVGNLSGIVEQNPSISLLN-- 890

  Fly   986 KQDI-----VELDC-NKGATNCVRIEC-----------DILNMPALSEAQVVVKARLWNSTLVSE 1033
             :|:     :.|:| :...|.||.:|.           :::||.......:.....:|...::..
  Fly   891 -EDLPVNNTLVLNCQDTNVTLCVPVEIRLENGLQLKPEELMNMTVSFTVNLKDADDIWEYFVIQT 954

  Fly  1034 YPRVERVRIFSTATAQIPESYGVEVM-DHNNIEVETRAYPELRNQQRDTSIPWLIIILGIVGGLL 1097
            ..:|.::...:.::..|.:.....|: .|..|.:                  |.||: .::.|:|
  Fly   955 DLKVHKIGDPTLSSFTIEKKIESNVICKHAEIAI------------------WKIIV-SVIVGIL 1000

  Fly  1098 LLALVTYVLWKVGFFKR 1114
            :.:..||.|:|.|||||
  Fly  1001 VFSAATYALYKRGFFKR 1017

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mewNP_001285196.1 Int_alpha 48..111 CDD:214549 13/65 (20%)
Int_alpha 317..368 CDD:214549 20/52 (38%)
Int_alpha 378..428 CDD:214549 30/51 (59%)
Int_alpha 446..491 CDD:214549 15/44 (34%)
Integrin_alpha2 479..1006 CDD:285619 109/547 (20%)
ItgaPS4NP_611025.2 VCBS 335..408 CDD:290251 29/77 (38%)
Int_alpha 384..434 CDD:214549 29/49 (59%)
Int_alpha 447..>492 CDD:214549 15/44 (34%)
Integrin_alpha2 484..808 CDD:285619 83/390 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439842
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D12256at50557
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23220
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.850

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