DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mew and Itga10

DIOPT Version :9

Sequence 1:NP_001285196.1 Gene:mew / 32275 FlyBaseID:FBgn0004456 Length:1243 Species:Drosophila melanogaster
Sequence 2:NP_001101169.2 Gene:Itga10 / 310683 RGDID:1305152 Length:1167 Species:Rattus norvegicus


Alignment Length:1380 Identity:302/1380 - (21%)
Similarity:481/1380 - (34%) Gaps:466/1380 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 LELPFTTIRPNCRLRQNLGILIILQCVLT--CYNFNLEQRLPIVKYGHPHSHFGYSVATHTIGEA 64
            :|||            ::..|.:...:||  |..|||::..|.:..|.|.:.|||||..|..|  
  Rat     1 MELP------------SIPHLFLPLALLTGLCSPFNLDEHHPRLFTGPPEAEFGYSVLQHVGG-- 51

  Fly    65 NGPNKTNCVLVGAPLDQNRQPNTTHSGALWRC--------PMTQRFDDCEQVITDGRRNFDSEIL 121
                ....:|||||.|   .|:....|.::||        |.|:..      :.|.:....|:  
  Rat    52 ----GQRWMLVGAPWD---GPSGDRKGDVYRCSIGGFHSAPCTKGH------LGDYQLGNSSQ-- 101

  Fly   122 SPPGN----DEIKEDQWMGVTVRSNPLQANGSGGKVI---VCAH-------------------RY 160
             |..|    ..:.|....|..:...||.:...|..|.   :|||                   .|
  Rat   102 -PAVNMHLGMSLLETDADGGFMACAPLWSRACGSSVFSSGICAHVDASFRLQGSLAPTAQRCPTY 165

  Fly   161 MYIV------------------------------------------------------------- 164
            |.:|                                                             
  Rat   166 MDVVIVLDGSNSIYPWSEVQTFLRRLVGRLFIDPEQIQVGLVQYGENPVHEWSLGDFRTKEEVVR 230

  Fly   165 ----------RENRYGQGLCYLLTNDLQFEEVHEPCKGRPVQ----------RQHEDYGL----- 204
                      ||.|..|.:....|     |...|...|||..          ..|:...|     
  Rat   231 AARNLSRREGRETRTAQAIMVACT-----EGFSESRGGRPEAARLLVVVTDGESHDGEELPAALK 290

  Fly   205 -CQAG-------------------------------------------TSAALLD---------- 215
             |:||                                           ..|||.|          
  Rat   291 ACEAGRVTRYGIAVLGHYLRRQRDPSSFLREIRAIASDPDERFFFNVTDEAALTDIVDALGDRIF 355

  Fly   216 ---------------------------DDTMVLGSPGPYTWRGSI-WVTQVGGEYLQRDKTTYYS 252
                                       .|.::.|..|.|.|.||: |:.:  |..|...:|..  
  Rat   356 GLEGSRGENESSFGLEMSEIGFSIHRLQDGILFGMVGAYDWGGSVLWLEE--GRRLFPPRTAL-- 416

  Fly   253 DHSDLNSPV--DKYSYLGMSVT-----GGRFFGHMSYAAGAPRSEGHGQVVIFDKSTDNPIPVHS 310
              .|...|.  :..:|||.||:     |||    ..:.:||||....|:|:.|....|..:.|..
  Rat   417 --EDEFPPALQNHAAYLGYSVSSMLLPGGR----RLFLSGAPRFRHRGKVIAFQLKKDGVVKVTQ 475

  Fly   311 ILDGEQFGSSFGYELATADINGDHRPD-LIVAAPLYF--TKTEGGAVYVY----QNIQDTLPMKY 368
            .|.|:|.||.||.||...|.:.|...: |:||||::.  ...|.|.:|||    ||:   |.::.
  Rat   476 SLQGDQIGSYFGSELCPLDTDMDGITNILLVAAPMFLGPQNKETGRIYVYVVGQQNL---LMLQG 537

  Fly   369 TLKLTGPLESRFGLALANIGDLNKDNCEDLAVGAPYEG--NGVVYIYLGSSQGLNSKPAQKIQAS 431
            ||:.....:||||.|:|.:.|||.|...|:|||||.|.  .|.:|:|.|:..|:...|.|:|.| 
  Rat   538 TLQPDRSQDSRFGFAMAALPDLNHDGFSDVAVGAPLEDGHQGALYLYHGTQTGIRPHPTQRIAA- 601

  Fly   432 ELGGTIPNGQPIRTFGISISGNTDLDDNSYPDVVIGAFNSSAAVILLARPIISIQTSVQRKELHN 496
               |::|  |.:|.||.|:.|..|||.:...||.:||  ..||::..::|||.:..:     |..
  Rat   602 ---GSMP--QALRYFGRSVDGRLDLDGDDLVDVAVGA--HGAAILFSSQPIIHLIPT-----LDV 654

  Fly   497 MDPNTPGCLDD---PASNLTCFTFRACCSIEPYD----EKNKELRLAYSVEAETFDHLKKFSRVF 554
            |.|:......|   ......|.|...|..::...    ::...:|.:.|::..|..     :|. 
  Rat   655 MPPHISVVQKDCKRRGQEAACLTASLCFQVKSQTPGRWDRRFHIRFSASLDEWTAG-----ARA- 713

  Fly   555 FFDRENKRTNVLSRVVRVHTNGRTECQAVTGYIKANTRDIQTPVRFRLKYSLVE-----PPLADS 614
            .||...:|.:.....:.|   |...|:.: .:...:|.|...||...:.::|..     |.||:.
  Rat   714 AFDGSGQRLSPGQLRLSV---GNVTCEQL-HFHALDTSDYLRPVALTVTFALDNTTKPGPVLAEG 774

  Fly   615 ALVRLNPILDQTQAHVDFEGTFQKDCGDDDLCESNLIIRVEPNITESSGNEYTLILDETELEVRI 679
            :...:..::           .|.||||.|:.|.::|:::.:.:|..|..:.:.:.....::.|.:
  Rat   775 SSTSIRKLI-----------PFSKDCGPDNECITDLVLQADMDIRGSRKSPFVVQGGRQKVLVSV 828

  Fly   680 NVSNLADSAYEAQLFIAHQAGVSYVATKKPTNA-----TCNSYNTTLVACSLGNPMLR--DTTTF 737
            .:.|..::||...|.::....: ::|:..|..|     .|...:.....|.:|:|:.:  ...:|
  Rat   829 TLENKKENAYNTSLSLSFSRNL-HLASLTPQRAKSVKVECAVPSPHARLCIVGHPVFQAGAKVSF 892

  Fly   738 VTIRFQPKGLEPSEKIMLFHIFANTTSKLVGPERPERDLRVNVVRRAKLNFRGWAIPEQSFYSGS 802
            : :.|     |.|...:|..:....|:.....||.|                             
  Rat   893 L-LEF-----EFSCTFLLSQVSVRLTASSSSLERNE----------------------------- 922

  Fly   803 SVANSVANTAATDIEGHGPMGMDDVGSQVHHMFTIFNEGPSTAPKVQMVIHWPYSLYSDPQSGRP 867
            ::.::.|.|:|.            :..:.|.||:    ..||..:.:  :| ||...  |....|
  Rat   923 TLQDNTAQTSAY------------IRYEPHLMFS----SESTLHRYE--VH-PYRAL--PVGPGP 966

  Fly   868 VQYLLYLEQVPTVEVSQGECHVAKEYVNPLNLASGSRENPAYLSAPAQMRMFPSQSRHSFNKSLI 932
                   |...|:.|....|||....|               :||     :.|:.: |..|..|.
  Rat   967 -------EFKTTLRVQNLGCHVVSGLV---------------VSA-----LLPAVA-HGGNYFLS 1003

  Fly   933 HSQRSYYSSSHRDDHSDDTQSNRNRVRRSFLERVTRLERLMYDPESSNAANGKKQDIVELDCNKG 997
            .||....::|....:..|...  ..|....|:..:||          |.:|              
  Rat  1004 LSQVISGNASCTVQNLTDPPG--FPVHPEELQHTSRL----------NGSN-------------- 1042

  Fly   998 ATNCVRIECDILNMPALSEAQVVV----------KARLWNSTLVSEYP-RVER--VRIFSTATAQ 1049
             |.|..:.|.:..:|..:|..|.:          :|:..:.|:||.:. ..|:  |.:.:.| :|
  Rat  1043 -TRCQAVRCHLGLLPKGTEISVGLLRLVHNEFFRRAKFKSVTVVSTFKLGTEKGSVLLLNEA-SQ 1105

  Fly  1050 IPESYGVEVMDHNNIEVETRAYPELRNQQRDTSIPWLIIILGIVGGLLLLALVTYVLWKVGFFKR 1114
            ..||: :||:                 |...|.|...|::..::||||||||:.:.|||:|||.|
  Rat  1106 WRESH-LEVI-----------------QTLPTLISLWILVGSVLGGLLLLALLVFCLWKLGFFTR 1152

  Fly  1115 IR-PTDPTLSGNLEK 1128
            .: |.:....|.||:
  Rat  1153 KKIPKEEQSEGKLEQ 1167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mewNP_001285196.1 Int_alpha 48..111 CDD:214549 20/70 (29%)
Int_alpha 317..368 CDD:214549 21/57 (37%)
Int_alpha 378..428 CDD:214549 24/51 (47%)
Int_alpha 446..491 CDD:214549 16/44 (36%)
Integrin_alpha2 479..1006 CDD:285619 97/545 (18%)
Itga10NP_001101169.2 Int_alpha 41..81 CDD:214549 17/48 (35%)
vWA_integrins_alpha_subunit 166..346 CDD:238746 20/184 (11%)
Int_alpha 482..>525 CDD:214549 16/42 (38%)
Int_alpha 545..599 CDD:214549 24/53 (45%)
Integrin_alpha2 642..1050 CDD:285619 97/545 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335701
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.740

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