DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mew and Gpld1

DIOPT Version :9

Sequence 1:NP_001285196.1 Gene:mew / 32275 FlyBaseID:FBgn0004456 Length:1243 Species:Drosophila melanogaster
Sequence 2:NP_001093982.1 Gene:Gpld1 / 291132 RGDID:631371 Length:843 Species:Rattus norvegicus


Alignment Length:386 Identity:98/386 - (25%)
Similarity:147/386 - (38%) Gaps:123/386 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   164 VRENRYGQGLCYLLTND-------LQFEEVH------------EPCKGRPVQRQHEDYGL----- 204
            :.:|.||:   .::|.:       |||.|:|            ...|...:..|.:||.|     
  Rat   192 IYDNLYGR---KVITKNVIVDCTYLQFLEMHGEMLAVSKLYSTYSTKSPFLVEQFQDYFLGGLDD 253

  Fly   205 ---------------CQAGTSAALLDDDTMVLGSPG--PYTWRGSIWVTQVGGEYLQRDKTTYYS 252
                           .:.|||...|.::.:.:...|  .:|...|    :|......|:.|.:.|
  Rat   254 MAFWSTNIYRLTSFMLENGTSDCNLPENPLFISCDGRKNHTLSSS----KVQKNDFHRNLTMFIS 314

  Fly   253 DHSDLNSPVDKYSYLGMSVTGGRFFGHMSYAAGAPRS----------------EGHGQVVIFDKS 301
              .|:...:: |:..|:..:.|.:         ||.|                .|:.|..:  |.
  Rat   315 --KDIRKNLN-YTERGVFYSTGSW---------APESVTFMYQTLERNLRMMFTGNSQTAL--KH 365

  Fly   302 TDNP-------IPVHSILDGEQFGSSFGYELATADINGDHRPDLIVAAPLYF--TKTEGGAVY-V 356
            ..:|       :|.          :..|:.:|:||:|.|...||:|.||.|.  .:.:.|.|| :
  Rat   366 VSSPSASYTLSVPY----------ARLGWVMASADLNQDGHGDLVVGAPGYSHPGRFQIGRVYII 420

  Fly   357 YQNIQDTLPMKYTL--KLTGPLE-----SRFGLALANIGDLNKDNCEDLAVGAPYEG------NG 408
            |.|.....|:...|  :..|.||     .|||.||| :.|.|||...|||||||..|      ||
  Rat   421 YGNDLGLPPIDLDLDKEAHGVLEGFQPSGRFGSALA-VLDFNKDGLPDLAVGAPSVGSGQLTYNG 484

  Fly   409 VVYIYLGSSQG-LNSKPAQKIQASELGGTIPNGQPIRTFGISISGNTDLDDNSYPDVVIGA 468
            .||:|.||.|| |:|.|...|...:   |..|      .|.::.. .|.|.:...|:||.:
  Rat   485 SVYVYYGSQQGRLSSSPNITISCKD---TYCN------LGWALLA-ADADGDGQHDLVISS 535

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mewNP_001285196.1 Int_alpha 48..111 CDD:214549
Int_alpha 317..368 CDD:214549 18/53 (34%)
Int_alpha 378..428 CDD:214549 30/56 (54%)
Int_alpha 446..491 CDD:214549 6/23 (26%)
Integrin_alpha2 479..1006 CDD:285619
Gpld1NP_001093982.1 Zn_dep_PLPC 28..220 CDD:395710 8/30 (27%)
FG-GAP 1. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 368..429 19/70 (27%)
Int_alpha 378..435 CDD:214549 19/66 (29%)
FG-GAP 2. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 435..498 30/63 (48%)
Int_alpha 447..503 CDD:214549 30/56 (54%)
FG-GAP 3. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 500..560 10/46 (22%)
FG-GAP 515..548 CDD:396418 6/22 (27%)
FG-GAP 4. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 564..625
FG-GAP 5. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 635..695
FG-GAP 6. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 707..773
FG-GAP 7. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 791..843
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D743479at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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