DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mew and Gpld1

DIOPT Version :9

Sequence 1:NP_001285196.1 Gene:mew / 32275 FlyBaseID:FBgn0004456 Length:1243 Species:Drosophila melanogaster
Sequence 2:NP_032182.2 Gene:Gpld1 / 14756 MGIID:106604 Length:842 Species:Mus musculus


Alignment Length:492 Identity:119/492 - (24%)
Similarity:180/492 - (36%) Gaps:154/492 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 SHFGYSVATHTIGEANGPNKTNCVLVGAPLDQNRQPNTTHSGALWRCPMTQRFDDCEQVITDGRR 114
            ||....|:.|::|...|..:|    :|| :|.....:..||..                      
Mouse   124 SHMVADVSWHSLGIEQGFLRT----MGA-IDFYNSYSDAHSAG---------------------- 161

  Fly   115 NFDSEILSP-PGNDEIKEDQWMGVTVRSNPLQANGSGGKVIVCAHRYMYIVRENRYGQGLCYLLT 178
            :|..::||. ..|......:|. |.||.                   :..:.:|.||:   .::|
Mouse   162 DFGGDVLSQFEFNFNYLSRRWY-VPVRD-------------------LLRIYDNLYGR---KVIT 203

  Fly   179 ND-------LQFEEVH------------EPCKGRPVQRQHEDYGL-------------------- 204
            .|       |||.|:|            ...|...:..|.:||.|                    
Mouse   204 KDVLVDCTYLQFLEMHGEMFAVSKLYSTYSTKSPFLVEQFQDYFLGGLDDMAFWSTNIYRLTSFM 268

  Fly   205 CQAGTSAALLDDDTMVLGSPG-PYTWRGSIWVTQVGGEYLQRDKTTYYSDHSDLNSPVDKYSYLG 268
            .:.|||...|.::.:.:...| .:|..||    :|......|:.|.:.|  .|:...:: |:..|
Mouse   269 LENGTSDCNLPENPLFISCDGRNHTLSGS----KVQKNDFHRNLTMFIS--RDIRKNLN-YTERG 326

  Fly   269 MSVTGGRFFGHMSYAAGAPRS--------EGHGQVVIFDKSTDNPIPVHSILDGEQFG---SSFG 322
            :..:.|.:         ||.|        |.:.::::...|..|...|.|........   :..|
Mouse   327 VFYSTGSW---------APESVTFMYQTLERNLRLMLAGSSQKNLNHVSSPSASYTLSVPYARLG 382

  Fly   323 YELATADINGDHRPDLIVAAPLYF--TKTEGGAVY-VYQNIQDTLPMKYTL--KLTGPLE----- 377
            :.:.:||:|.|...||:|.||.|.  .:.:.|.|| :|.|.....|:...|  :..|.||     
Mouse   383 WVMTSADLNQDGHGDLVVGAPGYSHPGRFQIGRVYIIYGNDLGLPPIDLDLDKEAHGILEGFQPS 447

  Fly   378 SRFGLALANIGDLNKDNCEDLAVGAPYEG------NGVVYIYLGSSQG-LNSKPAQKIQASE--- 432
            .|||.||| :.|.|:|...|||||||..|      ||.||:|.||.|| |:|.|...|...:   
Mouse   448 GRFGSALA-VLDFNQDGLPDLAVGAPSVGSGQLTYNGSVYVYYGSQQGRLSSSPNVTISCKDTYC 511

  Fly   433 -LGGTIPNGQPIRTFGISISGNTDLDDNSYPDVVIGA 468
             ||.|:.              .||.|.:...|:||.:
Mouse   512 NLGWTLL--------------ATDADGDGRHDLVISS 534

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mewNP_001285196.1 Int_alpha 48..111 CDD:214549 12/60 (20%)
Int_alpha 317..368 CDD:214549 17/56 (30%)
Int_alpha 378..428 CDD:214549 29/56 (52%)
Int_alpha 446..491 CDD:214549 6/23 (26%)
Integrin_alpha2 479..1006 CDD:285619
Gpld1NP_032182.2 Zn_dep_PLPC 28..219 CDD:376406 29/144 (20%)
FG-GAP 1. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 367..428 17/60 (28%)
Int_alpha 377..434 CDD:214549 17/56 (30%)
Int_alpha 446..502 CDD:214549 29/56 (52%)
FG-GAP 3. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 499..559 11/50 (22%)
FG-GAP 514..547 CDD:366834 8/35 (23%)
FG-GAP 4. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 566..624
FG-GAP 5. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 634..694
FG-GAP 6. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 706..772
FG-GAP 7. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 790..842
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D743479at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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