DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mew and itgae.2

DIOPT Version :9

Sequence 1:NP_001285196.1 Gene:mew / 32275 FlyBaseID:FBgn0004456 Length:1243 Species:Drosophila melanogaster
Sequence 2:XP_003200076.2 Gene:itgae.2 / 100536705 ZFINID:ZDB-GENE-130530-671 Length:1098 Species:Danio rerio


Alignment Length:1159 Identity:262/1159 - (22%)
Similarity:415/1159 - (35%) Gaps:345/1159 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 TCYNFNLEQRLPIVKYGHPHSHFGYSVATH--TIGEANGPNKTNCVLVGAPLDQNRQPNTTHSGA 92
            ||::.|    ..||:||.       |:.|.  .:...:|...         |.:.:|....::  
Zfish   214 TCFDCN----FAIVQYGS-------SIRTELSLLDNEDGARS---------LQKVKQIKQIYN-- 256

  Fly    93 LWRCPMTQRFDDCEQVITD------GRRN---------FDSEILSPPGN-DEI-KEDQWMGVTVR 140
                 :|:.......|:||      |.:|         .|.:||..|.. ||: .:.|..|||..
Zfish   257 -----LTKTASAINHVLTDIFIPENGSKNNSEKIIIVLSDGKILGDPMTLDEVLNKTQMKGVTRY 316

  Fly   141 SNPLQANGSGGKVIV---CAHRYMYIVRENRYGQGLCYLLTNDLQFEEVHEPCKGRPVQRQHEDY 202
            |     .|.|..::.   .......|....:|.....|...||: ...:.....|....:.....
Zfish   317 S-----IGVGDGILKNKDAIKEMTQIADPGKYYSVSSYGALNDI-LSSLERGIIGTEGTQHGFKL 375

  Fly   203 GLCQAGTSAALLDDDTMV---LGSPGPYTWRGSIWVTQVGGEYLQRDKTTYYSDHSDLNSPVDKY 264
            .|.:||.|:.||.::..|   .|:.|.|.|.        ||.:|:...|..:.:.|...:   |:
Zfish   376 QLAEAGFSSHLLYNEQKVEALFGAVGAYDWS--------GGVFLKSGNTVKFLNDSHNET---KF 429

  Fly   265 SYLGMSVTGGRFFGHMSYAAGAPRSEGHGQVVIFDKSTDNPIPVHSILDGEQFGSSFGYELATAD 329
            .|||.|||.........|.:||||....|.|.|||...      ..:|.|:|.||.||..|...|
Zfish   430 GYLGYSVTSAHLPSKTLYISGAPRYNLTGAVFIFDGLE------KYVLHGDQVGSYFGSVLCALD 488

  Fly   330 INGD-HRPDLIVAAPLYFTKTEGGAVYVYQNIQDTLPMKYTLKL---TGPLESRFGLALANIGDL 390
            ||.| |...|:|.||.:....|.|.|.||:..|:....:..::|   .|...:|||.|:.:|||:
Zfish   489 INKDEHTDHLLVGAPHFHLNGEEGKVLVYKLNQEDRFERAPVELRGDAGQTFARFGAAIGSIGDI 553

  Fly   391 NKDNCEDLAVGAPYE--GNGVVYIYLGSSQGLNSKPAQKIQASELGGTIPNGQPIRTFGISIS-G 452
            :.:...|:|||||.|  ..|.||||.|..:||  :.:|||..|:.      |..:..||.|:| |
Zfish   554 DNNKFNDVAVGAPLETGSAGSVYIYSGFEEGL--RFSQKISPSDF------GMKLVYFGQSVSVG 610

  Fly   453 NTDLDDNSYPDVVIGAFNSSAAV----ILLARPIISIQTSVQRKELHNMDPNTPGCLDDPASNLT 513
            .....|  .|.:.:|:....:..    :|:..|.|.|.|.|... .|.|         :..|:..
Zfish   611 PAPASD--IPCIAVGSLGRVSVFETIPVLIIEPTIKIDTEVIAL-THQM---------NKISSEL 663

  Fly   514 CFTFRACCSIEP---YDEKNKELRLAYSVEAET----------FDHLKKFSRVFFFDRE--NKRT 563
            ......|.:|:.   ..||::...:.|.::.::          .|.|.|.:.....|.|  ||:.
Zfish   664 SMKITVCFNIKKGKLKAEKSETQAVDYEIDLDSGASKKRLTCGADSLIKDTFTLTPDEECTNKKL 728

  Fly   564 NVLSRVVRVHTNGRTECQAVTGYIKANTRDIQTPVRFRLKYSLV----EPPLADSALVRLNPILD 624
            ..|         |..:|              .:|::.:|.:||.    |.|:.         |||
Zfish   729 TYL---------GCFDC--------------FSPIKIKLSFSLASNKNEAPIR---------ILD 761

  Fly   625 Q-TQAHVDFEGTFQKDCGDDDLCESNLIIRVEPNIT--ESSGNEYTLILDETE-LEVRINVSNLA 685
            . |...|..|..|:|||...| |        :|:||  :|..:|.|:.:.||: |.:..|.:|..
Zfish   762 AFTPTEVVKEIPFEKDCQAAD-C--------KPSITLSDSKISETTITMGETQNLNINFNFTNTG 817

  Fly   686 DSAYEAQLFIAHQAGVSYVATKKPTNATCNSYNTTLVACSLGNPML---RDTTTFVTIRFQPKG- 746
            |.:|:..|.:.:.   |.::.:|...|.|...|...:.|.|.:|:.   ..|..|::.:...|. 
Zfish   818 DPSYKTTLTLTYP---SILSERKIEGAACPVKNDNQIQCHLQHPVFTRSAQTNLFISWQLNDKSD 879

  Fly   747 LEPSEKIMLFHIFANTTSKLVGPERPERDLRV---NVVRRAKLNFRGWAIPEQSFYSGSSVANSV 808
            |:.||      |.||.||:..|.:.  .|.|:   ||:....:..||.|.|              
Zfish   880 LKKSE------IIANLTSQNNGIQL--LDSRIYTFNVMYFLPILIRGSAEP-------------- 922

  Fly   809 ANTAATDIEGHGPMGMDDVGSQVHHMFTIFNEGPSTAPKVQMVIHWPYSLYSDPQSGRPVQYLLY 873
             |....:..|.|                      .|.|     |.:......:.:.|..:..::.
Zfish   923 -NILRIEEGGKG----------------------KTQP-----IKFKIQFQGENKYGATIDVIIT 959

  Fly   874 LEQVPTVEVSQGECHVAKEYVNPLNLASGSRENPAYLSAPAQMRMFPSQSRHSFNKSLIHSQRSY 938
            ::    ::.|:.:.|:.|  :.|         ....|.|                          
Zfish   960 IK----MDTSKTDLHITK--IQP---------EVCVLEA-------------------------- 983

  Fly   939 YSSSHRDDHSDDTQSNRNRVRR-SFLERVTRLERLMYDPESSNAANGKKQDIVELDCNKGATNCV 1002
                             |:|:. |::.:.|.                |:..|:.::.|       
Zfish   984 -----------------NKVKEASYIYKCTL----------------KELQIITIEAN------- 1008

  Fly  1003 RIECDILNMPALSEAQVVVKARLWNSTLVSEYPRVERVRIFSTATAQIPESYGVEVMDHNNIEVE 1067
               ..|.::...||..:|.....::.||   |...:.::.|   |.::|.:         .::|.
Zfish  1009 ---VFIHDVQDTSEKIIVEGQYSYDETL---YSAKDTIKSF---TLEVPVT---------KMQVM 1055

  Fly  1068 TRAYPELRNQQRDTSIPWLIIILGIVGGLLLLALVTYVLWKVGFFKRIRPTDPT 1121
            |...|               ||.|.:||.|.|.:...:|.|.|||:|....|.|
Zfish  1056 TSKGP---------------IIGGSIGGFLFLLIFIIILIKCGFFRRRHKVDQT 1094

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mewNP_001285196.1 Int_alpha 48..111 CDD:214549 7/64 (11%)
Int_alpha 317..368 CDD:214549 20/51 (39%)
Int_alpha 378..428 CDD:214549 23/51 (45%)
Int_alpha 446..491 CDD:214549 14/49 (29%)
Integrin_alpha2 479..1006 CDD:285619 103/557 (18%)
itgae.2XP_003200076.2 vWFA 180..355 CDD:320736 35/172 (20%)
Int_alpha 429..>465 CDD:214549 15/35 (43%)
Int_alpha 477..>517 CDD:214549 17/39 (44%)
Int_alpha 540..589 CDD:214549 22/50 (44%)
Integrin_alpha2 635..>922 CDD:312071 83/348 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574903
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D743479at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.850

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