DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mew and itga9

DIOPT Version :10

Sequence 1:NP_001285196.1 Gene:mew / 32275 FlyBaseID:FBgn0004456 Length:1243 Species:Drosophila melanogaster
Sequence 2:XP_002940293.3 Gene:itga9 / 100494771 XenbaseID:XB-GENE-994231 Length:1034 Species:Xenopus tropicalis


Alignment Length:1195 Identity:300/1195 - (25%)
Similarity:508/1195 - (42%) Gaps:239/1195 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 LQCVLTC-YNFNLEQRLPIVKYGHPHSHFGYSVATHTIGEANGPNKTNCVLVGAPLDQNRQPNTT 88
            :...|.| ||.:|:.  |:|..|...|.|||||..|...|      |..||||||...:|..::.
 Frog    21 ISVTLVCSYNVDLDH--PVVFRGPNGSFFGYSVLEHYHDE------TRWVLVGAPKADSRYSSSI 77

  Fly    89 HS-GALWRCPMTQRFDDCEQVITDGRRNFDSEILSPPGNDEIKEDQWMGVTVRSNPLQANGSGGK 152
            .: ||:::|.:....:.....:..||.|............: :||:|||||:...| :||||   
 Frog    78 KTPGAVFKCRVHSNPNKSCTELDLGRGNSRGTRCGKTCKGD-REDEWMGVTLARQP-KANGS--- 137

  Fly   153 VIVCAHRY--MYIVRENRYGQGLCYLLTNDLQFEEVHE------PCKGRPVQRQHEDYGLCQAGT 209
            |:.||||:  :|...|:....|.|.::..:|     |.      ||.....::..|::|.||||.
 Frog   138 VLACAHRWKNIYYESEDILPYGYCVIIPPNL-----HANGNNLMPCYEEYKKKYGEEHGSCQAGI 197

  Fly   210 SAALLDDDTMVLGSPGPYTWRGSIWVTQV-GGEYLQ-RDKTTYYSDHSDLNSPVDKYSYLGMSVT 272
            :.:.: ::.:|:|:||.|.|.|::.|..: ..:|.: ||:.          :...:|:|||.:||
 Frog   198 AGSFM-EELVVMGAPGSYYWTGTVKVLNLTDNKYFKLRDQV----------ATEKRYTYLGYAVT 251

  Fly   273 GGRFF--GHMSYAAGAPRSEGHGQVVIF--DKSTDNPIPVHSILDGEQFGSSFGYELATADINGD 333
            .|.|.  ..|...||||:....|:|.||  ||.:.:.:.:.. ..|::.||.||..|...|:|.|
 Frog   252 AGHFSQPTTMDVVAGAPQDSRIGKVFIFRTDKRSVSLVKIFQ-ASGKKVGSYFGSSLCAVDLNSD 315

  Fly   334 HRPDLIVAAPLYFTKTEGGAVYVYQNIQDTLPMKYTLKLTG--PLESRFGLALANIGDLNKDNCE 396
            ...||:|.||::....:.|.|.||.|..:.: |...:.|.|  ...:.||.::||:||::.|...
 Frog   316 GLSDLLVGAPMFSEVRDEGQVTVYINRGNGV-MDEHINLNGDNAYNAHFGESMANLGDIDDDGFP 379

  Fly   397 DLAVGAPYEGN--GVVYIYLGSSQGLNSKPAQKIQASELGGTIPNGQPIRTFGISISGNTDLDDN 459
            |:|:|||.|.:  |.||||.|.:.|:.||.:.:|.:..:|   |.   :..||.|:||..|:|.|
 Frog   380 DVAIGAPQEDDYAGAVYIYHGDTLGIVSKYSMRISSKSIG---PG---LMMFGQSVSGGIDMDKN 438

  Fly   460 SYPDVVIGAFNSSAAVILLARPIISIQTSVQRKELHNMDPNTPGCLDDPAS----NLT-CFTFRA 519
            .|.|:.||||.|..||:|..||:|::..::......|:  ..|.|.|....    |:| ||.||.
 Frog   439 GYLDLTIGAFMSDTAVLLRTRPVITVDVTILLPTSINI--TAPQCHDGTQQINCVNVTVCFRFRG 501

  Fly   520 CCSIEPYDEKNKELRLAYSVEAETFDHLK-KFSRVFFFDRENKRTNVLSRVVRVHTNGRTECQAV 583
                   .....|:.|.|::.|:.....| :..|||..........|..::...|.  ..:|:..
 Frog   502 -------KHVPGEIELYYNLTADVAKKEKSQQPRVFLVSSGENVAQVSEKLQLTHL--ELKCEQY 557

  Fly   584 TGYIKANTRDIQTPVRFRLKYSLVEPPL--ADSALVRLNPIL-----------DQTQAHVDFEGT 635
            ..::|...:|:.:|:.|...|||.|..:  ....|..|.|||           :||:        
 Frog   558 LAHVKRRVKDVISPIVFEASYSLGEHIINNQQKELPALKPILRWKKGDKLAQRNQTR-------- 614

  Fly   636 FQKDCGDDDLCESNLIIRVEPNITE-SSGNEYTLILDETELEVRINVSNLADSAYEAQLFIAHQA 699
            |:::|..|| |.::|.::.:..::. .|...|..:.....:.:.|:|||..|.||:..::.....
 Frog   615 FERNCRSDD-CAADLNLKGKLLLSSFDSKTPYLALGAVKNISLNISVSNYGDDAYDTNVYFNFSR 678

  Fly   700 GVSYVA--TKKPTNATCNSYNTTLVACSLGNPMLRDTTTF-VTIRFQPKGLEPSEKIMLFHIFAN 761
            .:.::.  .:.....:|.......:.||:|.|.:|..:.: .::.|....|...|:.:.|.:.|.
 Frog   679 ELYFIKMWQEDELGISCELLEDDFLKCSVGFPFMRSKSKYKFSVIFDTIHLSGDEESLQFLVTAQ 743

  Fly   762 TTSKLVGPERPERD----LRVNVVRRAKLNFRGWAIPEQSFYSGSSV--ANSVANTAATDIEGH- 819
            :.:  :..|....|    |.|:::.....:..|...| .||..|.||  :|.:   ...|:|.| 
 Frog   744 SGN--IEKEESLHDNILHLAVSLMHEVDTSVTGVVSP-SSFVYGESVDPSNFI---QLQDLECHF 802

  Fly   820 GPMGMDDVGSQVHHMFTIFNEGPSTAPKVQMVIHWPYSLYSDPQSGRPVQYLLYLEQVPTVEVSQ 884
            .|:...         |.::|.||||.|...:.:.:|..|.:....      :.|::.: .|...:
 Frog   803 QPLNFS---------FQVYNAGPSTLPGSTINVLFPNRLTATGAE------MFYIQDI-MVSQDK 851

  Fly   885 GECHVAKEYVNPLNLASGSRENPAYLSAPAQMRMFPSQSRHSFNKSLIHSQRSYYSSSHRDDHSD 949
            |.|...|              |||....|..            .:::.|:..::::.|       
 Frog   852 GNCSFQK--------------NPAPCVIPQD------------KENIFHTIFAFFTKS------- 883

  Fly   950 DTQSNRNRVRRSFLERVTRLERLMYDPESSNAANGKKQDIVELDCNKGATNCVRIECDILNMPAL 1014
                                              |:|.    |:|.:.:.:|:.:.|.|.:: |.
 Frog   884 ----------------------------------GRKM----LECERTSKSCLVLNCYISSL-AK 909

  Fly  1015 SEAQVVVKARLWN-------STLVSEYPRVERVRIFSTATAQIPESYGVEVMDHNNIEVETRAYP 1072
            .|.:.:....|.|       |:.|.::.....|::.||..|       :||...|:.:. |..:.
 Frog   910 EETRNIDVLMLLNTEILKKDSSSVIQFVSKAVVKVDSTLRA-------IEVQQGNSNQA-TVIFE 966

  Fly  1073 ELRN-QQRDTSIPWLIIILGIVGGLLLLALVTYVLWKVGFFKRIRPTDPTLSGNLEKMNEEKPFL 1136
            .|.| :.|...:.| ||.:.::.|:|:..|:..:|||:|||:|                ..|..:
 Frog   967 ALHNLEPRGYVVGW-IIAISLLVGILIFLLLAVLLWKMGFFRR----------------RYKEII 1014

  Fly  1137 APSKNTHHVFXQEGTVGWDLVRRRR 1161
            ...||      :|....|:.|::.:
 Frog  1015 EAEKN-----RKENEESWNWVQKNQ 1034

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mewNP_001285196.1 Int_alpha 48..111 CDD:214549 19/63 (30%)
Int_alpha 317..368 CDD:214549 19/50 (38%)
Int_alpha 378..428 CDD:214549 22/51 (43%)
Int_alpha 446..491 CDD:214549 21/44 (48%)
Integrin_alpha2 480..1006 CDD:462478 106/555 (19%)
itga9XP_002940293.3 Int_alpha 43..91 CDD:214549 19/53 (36%)
Int_alpha 243..>280 CDD:214549 16/36 (44%)
Int_alpha 300..345 CDD:214549 18/44 (41%)
Int_alpha 360..413 CDD:214549 22/52 (42%)
Int_alpha 424..>465 CDD:214549 21/40 (53%)
Integrin_alpha2 459..902 CDD:462478 106/555 (19%)

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