DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mew and itga11

DIOPT Version :9

Sequence 1:NP_001285196.1 Gene:mew / 32275 FlyBaseID:FBgn0004456 Length:1243 Species:Drosophila melanogaster
Sequence 2:XP_017947982.1 Gene:itga11 / 100489152 XenbaseID:XB-GENE-483822 Length:1188 Species:Xenopus tropicalis


Alignment Length:1361 Identity:267/1361 - (19%)
Similarity:461/1361 - (33%) Gaps:488/1361 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 FNLEQRLPIVKYGHPHSHFGYSVATHTIGEANGPNKTNCVLVGAPLDQNRQPNTTHSGALWRCPM 98
            ||::.:.|.:..|...:.|||:|..|.|.      ....::||||.|.|....|   |.:::|.:
 Frog    23 FNIDTKRPRIISGSKDAFFGYTVQQHQIA------GKKWLVVGAPFDVNGPQKT---GDIYKCSV 78

  Fly    99 T-QRFDDCEQVITDGRRNFDSEILSPPGNDEIKEDQWMGVTVRSNPLQANGSGGKVIVCAHRYMY 162
            | ...:||.: :..||....:.       .|.|::..:|:::.:||     .....:.|:..:.:
 Frog    79 TNDTSNDCTK-LGIGRVTLSNV-------SERKDNMRLGMSLVTNP-----KDNSFVACSPLWSH 130

  Fly   163 IVRENRYGQGLCYLLTNDLQFEEVHEPCKGR---------------------------------- 193
            ....:.|..|:|..:.::.:|..:..|...|                                  
 Frog   131 ECGSSYYTTGMCSRVNSNFRFSRIVAPALQRCPTFMDIVIVLDGSNSIYPWVEVQSFLISILQKF 195

  Fly   194 ---PVQRQ-----------HEDY-----------------------------GLCQAGT------ 209
               |.|.|           ||.|                             |:.:|.|      
 Frog   196 YIAPGQIQVGVLQYGETVVHEFYLNNYRSVTDVVEAAKRIEQRGGTETRTALGIEKAVTEAFQRG 260

  Fly   210 ----------------------------------------------------------------- 209
                                                                             
 Frog   261 GRKGAKKVMIVITDGESHDSPDLQRVIESSEKDNITRYAVAVLGYYNRRGINPEAFLNEIKYIAS 325

  Fly   210 ------------SAALLD-------------------------------------DDTMVLGSPG 225
                        .|||.|                                     :|.::||:.|
 Frog   326 DPDDKHFFNVTDEAALKDIVDALGERIFSLEGGTNKNETSFGLEMSQAGFSSHVVEDGILLGAVG 390

  Fly   226 PYTWRGSIWVTQVGGEYLQRDKTTYYSDHSDLNSPVDKYSYLGMSVTGGRFFGHMS-YAAGAPRS 289
            .|.|.|::......|:.:.| :.:|..:..|  ...:..:|||.:||....:..:. |.|||||.
 Frog   391 AYDWNGAVLKETSSGKVIPR-RESYLKEFPD--ELKNHGAYLGYTVTSVMTWQRVRIYVAGAPRF 452

  Fly   290 EGHGQVVIFDKSTDNPIPVHSILDGEQFGSSFGYELATADINGDHRPD-LIVAAPLYFTK-TEGG 352
            ...|:|::|.......:.:|..|.|.|.||.||.|:.:.|::||...| |:|.||:||.. .|.|
 Frog   453 NHTGKVIVFTMHGAENMTIHQALQGNQIGSYFGGEMDSVDVDGDGVTDILLVGAPMYFIDGWERG 517

  Fly   353 AVYVY--------QN--IQDTLPMKYTLKLTGPLESRFGLALANIGDLNKDNCEDLAVGAPYEGN 407
            .|.|:        .|  :||         |.....||||.::|.:.|||:|...|:.||||.|.|
 Frog   518 RVSVFVLRERQFIHNGFLQD---------LNSSQNSRFGSSIAAVPDLNQDLYNDVVVGAPLEDN 573

  Fly   408 --GVVYIYLGSSQGLNSKPAQKIQASELG-GTIPNGQPIRTFGISISGNTDLDDNSYPDVVIGAF 469
              |.:||:.|..:.:..|..|:|.|:||. |.:       .||.:|.|..|::::...|:.:|:.
 Frog   574 HKGAIYIFHGLRKNILKKYKQRISAAELAPGLV-------YFGCNIHGEMDMNEDGLVDLAVGSM 631

  Fly   470 NSSAAVILLARPIISIQTSVQ---------RKELHNMDPNTPGCLDDPASNLTCFT--FRACCSI 523
            .:  ||:|..|.::.|..::.         .|:.|. :.....|:    |...||:  |:|    
 Frog   632 GN--AVLLWTRSVVKINATMHFEPPKINIFSKDCHR-NGREATCM----SAFICFSPMFKA---- 685

  Fly   524 EPYDEKNKELRLAYSVEAETFDHLKKFSRVFFFDRENKRTNVLSRVVRVHTNGRTECQAVTGYIK 588
            :.:..:|  :.:.|:|   :.|..:...|....|....:..|  :.:|. |:|..:||.:..:: 
 Frog   686 QQFQGQN--VAIKYNV---SIDERRYIPRAIIDDIGGDKHFV--KTIRA-TSGHNQCQQLNFHV- 741

  Fly   589 ANTRDIQTPVRFRLKYSLVEPPLADSALVRLNPILDQ---TQAHVDFEGTFQKDCGDDDLCESNL 650
            .:|.|...|:.|.|:|.|        |.....|:|::   |...|..  .|...|..|:.|..:|
 Frog   742 LDTADYVKPITFSLEYEL--------AFSDQGPVLEEDWPTSLKVSV--PFWNGCNQDERCVPDL 796

  Fly   651 IIRVEPNI-------------TESSGNEYTLILDET---------ELEVRINVSNLADSAYEAQL 693
            .:.|:.:|             |:|:..|:....|.:         .:.:.:.:.|..::||...|
 Frog   797 YLDVKHDIPTALEYCQRFLYRTQSACTEFISAFDNSVFIIQRSRRRVALEVVLENRGENAYSTAL 861

  Fly   694 FIAHQAGVSYVA--TKKPTN--ATCNS-----YNTTLVACSLGNPMLRDTT--------TFVTIR 741
            .|:|...:.:.:  ||:.::  ..|.|     :..|   |::..|..|...        .|...:
 Frog   862 NISHSQNLQFASLITKEDSDIKIECKSDDRFPHTKT---CNVSYPFFRAKAKVAFRLDFEFSKYQ 923

  Fly   742 FQPKGLEPSEKIMLFHIFANTTSKLVGPERPERDLRVN----------VVRRAKLNFRGWAIPEQ 796
            |.|        .:..|:.|.:.|:.....|.:.::.::          ..|.:.||         
 Frog   924 FLP--------FLQVHLSAGSDSEEQESTRFDNEVLLDFHLKYESDLLFTRHSSLN--------- 971

  Fly   797 SFYSGSSVANSVANTAATDIEGHGPMGMDDVGSQVHHMFTIFNEGPSTAPKVQMVIHWPYSLYSD 861
                                               |:..|  :||.:..          |:....
 Frog   972 -----------------------------------HYEIT--SEGSADR----------YNAIGP 989

  Fly   862 P-QSGRPVQYLLYLEQVPTVEVSQGECHVAKEYVNPLNLASGSRENPAYLSAPAQMRMFPSQSRH 925
            | .|...:|.|.:                   :...:||.         ::.|...|   ..:|.
 Frog   990 PFNSSFKIQNLGF-------------------FPEEINLK---------ITVPVATR---GGNRL 1023

  Fly   926 SFNKSLIHSQRSYYSS--SHRDDHSDDTQSNRNRVRRSFLERVTRLERLMYDPESSNAANGKKQD 988
            .|..|||..|.:...:  .:..|:       |.:.....|.||.:|             |....|
 Frog  1024 LFLHSLISDQENAVCNIWGNSTDY-------RRKPTEEDLSRVPQL-------------NHSNSD 1068

  Fly   989 IVELDCNKGATNCVRIECDILNMPALSEAQVVVKARLWNSTLVSEYPRVERVRIFSTATAQIPES 1053
            ::.:||             :|.:.:..||..::...||:.:..:...|...|.:|:....:....
 Frog  1069 VISIDC-------------VLILASNQEASFILHGDLWSRSFRAMNFRSVNVVVFAALQRKFQSP 1120

  Fly  1054 YGVEVMDHNNIEVETRAYPELRNQQRDTSIPWLIIILGIVGGLLLLALVTYVLWKVGFFKR 1114
            :....      |..||......::|.:..:|..:||...:||||||||:...|||:|||||
 Frog  1121 FIFRE------EEPTRQITFAISKQEEWEVPIWVIITSTLGGLLLLALLVLALWKLGFFKR 1175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mewNP_001285196.1 Int_alpha 48..111 CDD:214549 18/63 (29%)
Int_alpha 317..368 CDD:214549 22/62 (35%)
Int_alpha 378..428 CDD:214549 22/51 (43%)
Int_alpha 446..491 CDD:214549 12/53 (23%)
Integrin_alpha2 479..1006 CDD:285619 98/592 (17%)
itga11XP_017947982.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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