DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mew and itga8

DIOPT Version :9

Sequence 1:NP_001285196.1 Gene:mew / 32275 FlyBaseID:FBgn0004456 Length:1243 Species:Drosophila melanogaster
Sequence 2:XP_002939074.2 Gene:itga8 / 100487624 XenbaseID:XB-GENE-961825 Length:1081 Species:Xenopus tropicalis


Alignment Length:1205 Identity:322/1205 - (26%)
Similarity:520/1205 - (43%) Gaps:248/1205 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 RPNCRLRQNLGILIILQCVLTCYNFNLEQRLPIVKYGHPHSHFGYSVATHTIGEANGPNKTNCVL 74
            :|.|.:      |:::.....|..|||:.....|..|.|.|:|||||..:....|    ||: :|
 Frog    39 QPACPM------LMVIMLSGVCSAFNLDVEKVTVYSGPPDSYFGYSVDFYLPDSA----KTS-IL 92

  Fly    75 VGAPLDQNRQPNTTHSGALWRCPMTQRFDD-----CEQVITDGRRNFDSEILSPPGNDEIKEDQW 134
            :|||.....||.....||::.||    |.|     |:|:..|...|.:..:.......|.|.:||
 Frog    93 IGAPKANTSQPQIVEGGAVYYCP----FPDTLPTGCKQIPFDITNNRNIRLNGTKQPVEFKSNQW 153

  Fly   135 MGVTVRSNPLQANGSGGKVIVCAHRYMY-----IVRENRYGQGLCYLLTNDLQFEEVHEPCKGRP 194
            .|.|||::.       .||:.||..|.:     |..::..  |.||:...:......:.||:...
 Frog   154 FGATVRAHK-------EKVVACAPLYHWRSIKPISEKDPV--GTCYIAIQNFSAYAEYSPCRSDL 209

  Fly   195 VQRQHEDYGLCQAGTSAALLDDDTMVLGSPGPYTWRGSIW----------------VTQVGGEYL 243
            .....:  |:||||.|.....:..:.||.||.:.|:|.::                :.::.||..
 Frog   210 ADPAGQ--GVCQAGFSLDFYKNGDLALGGPGSFYWQGQVFTASIADIIKDYSFKSIIRKISGEKQ 272

  Fly   244 QRDKTTYYSDHSDLNSPVDKYSYLGMSVTGGRFFGH--MSYAAGAPR-SEGHGQVVIFDKSTDNP 305
            .:...:.|.|           ||||.||..|.|...  ....||.|| ::..|.|.|.: |||  
 Frog   273 TKMAQSAYDD-----------SYLGYSVAVGEFTDDSVQEVVAGVPRGAQNFGYVSIIN-STD-- 323

  Fly   306 IPVHSILDGEQFGSSFGYELATADINGDHRPDLIVAAPLYFTK------TEGGAVYVYQNIQDTL 364
            :.......|:|..|.|||.:|.:|:|.|...|::|.|||:..:      .|.|.||:|.. :..|
 Frog   324 MTFIQNFTGDQMASYFGYTVAVSDVNNDGLDDILVGAPLFMDREFESNPREVGKVYLYMQ-ESAL 387

  Fly   365 PMKYTLKLTG-PLESRFGLALANIGDLNKDNCEDLAVGAPYEG---NGVVYIYLGSSQGLNSKPA 425
            ..:....|.| .:..|||.|:|::||||:|...|:|||:|:.|   .|.|:||.|:|.|||:..:
 Frog   388 EFRDPQVLKGTEVFGRFGSAIAHLGDLNQDGYNDIAVGSPFAGEDRKGRVFIYNGNSNGLNTDTS 452

  Fly   426 QKIQASELGGTIPNGQPIRTFGISISGNTDLDDNSYPDVVIGAFNSSAAVILLARPIISIQTSVQ 490
            |.::.:....::|.|     ||.::.|::|:|.|.|||:::|||.:..||:..|||:|::...:.
 Frog   453 QILEGAWASQSMPAG-----FGFTLRGDSDIDKNDYPDLIVGAFGAGKAVVYRARPVITVDAQLL 512

  Fly   491 RKELHNM--DPNTPGC-LDDPASNLTCFTFRACCSIEPYDEKNKELRLAYSVEAE-TFDHLKKFS 551
               ||.|  :|....| |.:....:||||.|.|.::     ..:.:.....|:|: ..|.||:..
 Frog   513 ---LHPMILNPENKTCQLPNSEFLVTCFTVRVCVTV-----SGQSIPSNIVVKADLELDWLKQKG 569

  Fly   552 RVFFFDRENKRTNVL-------SRVVRVHTNGRTECQAVTGYIKANT--RDIQTPVRFRLKYSLV 607
            .|       |||..:       |..:.::....::|.....|::..:  ||..||:...|.|||.
 Frog   570 AV-------KRTLFMESHQAHHSFDLIINKQRLSQCLDFLVYLREESEFRDKLTPISVNLNYSLD 627

  Fly   608 EPP-LADSALVRLNPILD-------QTQAHVDFEGTFQKDCGDDDLCESNLIIRVEPNITESSGN 664
            |.. |.|.   .|.|||:       |.|||:      ..|||:|::|..:|.:...|:      .
 Frog   628 ESAYLGDQ---ELKPILNRYKKATIQEQAHI------LVDCGEDNMCIPDLKLSARPD------K 677

  Fly   665 EYTLILDETELEVRINVSNLADSAYEAQLFIAHQAGVSYVATKKPTNA----TCN---SYNTTLV 722
            ...:|.:|..:...||..|..:.||||:|.:.......||..::....    .|.   ...:.||
 Frog   678 NQLVIGEENHILFIINTKNQGEGAYEAELRMIIPPEADYVGIERNMEGLRQLNCEYKMENESRLV 742

  Fly   723 ACSLGNPMLRDTTTFVTIRFQPKGLEPSEKIMLFHIFANTTSKLVGPERPERD---LRVNVVRRA 784
            .|.|||||:..|...|.:||..:.||..:.| .|.::..:::|    :.|..:   |:||:...|
 Frog   743 VCDLGNPMVAGTNLSVGLRFVVQRLETVDAI-TFDLYIKSSNK----DNPNSNFVSLQVNITAVA 802

  Fly   785 KLNFRGWAIPEQSFYSGSSVANSVANTAATDIEGHGPMGMDDVGSQVHHMFTIFNEGPSTAPKVQ 849
            ::..||.:.|.|       :...:.|....:    .|....|||..|.|::.:.|.|||...:.|
 Frog   803 QVEIRGVSHPPQ-------IILPIPNWEPKE----KPSEEKDVGPLVQHIYELHNIGPSAISETQ 856

  Fly   850 MVIHWPYSLYSDPQSGRPVQYLLYLEQVPTVEVSQGECHVAKEYVNPLNLASGSRENPAYLSAPA 914
            :.:.||        |....::|||:            .|:..|  .||...:||..|...:. |:
 Frog   857 LNVGWP--------SQSRDEFLLYV------------FHIQTE--GPLKCQAGSAINTLNIK-PS 898

  Fly   915 QMRMFPSQSRHSFNKSLIHSQRSYYSSSHRDDHSDDTQSNRNRVRRSFLERVTRLERLMYDPESS 979
            :....|..:....|.|:.|      :.|.||                    |...|.|.:.|..:
 Frog   899 EPEDTPELAAFLRNTSVSH------AVSRRD--------------------VAVAEALRHIPTPT 937

  Fly   980 NAANGKKQDIVELDCNKGATNCVRIECDILNMPALSEAQVVVKARLWNSTLVSEYPRVERVRIFS 1044
            ..          |:|..  ..|:.|.|.:.::.....|.|.:::|||..|.      ::|...:.
 Frog   938 KL----------LNCTN--VKCLMISCKVGHLGGGQRAVVKIRSRLWAPTF------LQRKNDYY 984

  Fly  1045 TATAQIPESYGVEVMDHN---------NIEVETR---AYPELRNQQRDTSIPWLIIILGIVGGLL 1097
            :..|.:  |:.|:.|.::         .|.::|.   |.|.:     ..:||..:|:|.|:.|:|
 Frog   985 SLIANV--SFEVKKMPYDIQPAKLPAATILIKTSVIWATPNI-----SFAIPLWVILLAILLGIL 1042

  Fly  1098 LLALVTYVLWKVGFFKRIRPTDPTLSGNLEKMNEE 1132
            :||::|.|:||.|||.|.||....::.:.:::..:
 Frog  1043 VLAILTLVMWKCGFFDRARPPQDDVADDTQQLTNK 1077

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mewNP_001285196.1 Int_alpha 48..111 CDD:214549 24/67 (36%)
Int_alpha 317..368 CDD:214549 19/56 (34%)
Int_alpha 378..428 CDD:214549 26/52 (50%)
Int_alpha 446..491 CDD:214549 18/44 (41%)
Integrin_alpha2 479..1006 CDD:285619 134/557 (24%)
itga8XP_002939074.2 Int_alpha 71..130 CDD:214549 24/67 (36%)
Int_alpha 335..>385 CDD:214549 18/50 (36%)
Int_alpha 401..455 CDD:214549 26/53 (49%)
Int_alpha 468..510 CDD:214549 18/41 (44%)
Integrin_alpha2 501..952 CDD:369878 134/557 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 51 1.000 Domainoid score I11372
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D325432at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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