DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sno and Sbno2

DIOPT Version :9

Sequence 1:NP_001096967.1 Gene:sno / 32273 FlyBaseID:FBgn0265630 Length:1653 Species:Drosophila melanogaster
Sequence 2:XP_006240970.1 Gene:Sbno2 / 314619 RGDID:1307194 Length:1351 Species:Rattus norvegicus


Alignment Length:1456 Identity:623/1456 - (42%)
Similarity:815/1456 - (55%) Gaps:293/1456 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   225 ELMNLAAYVAAKGSNAPPPPPPSTAANS--VRHSPTGGIPNPGGNFFGGSAAASTSASAANFNMA 287
            :|.|...:....||.:||..|..::.|.  |..:|          |.||.:...||.        
  Rat    25 QLQNRLLHCPWWGSFSPPLYPTFSSENQQFVSSTP----------FLGGQSCPETSY-------- 71

  Fly   288 ASLLAQMSYAGGASQIRALKVAGNIGGVGNNQKPPPIATTP-----GSGGPAGGAPGSGVKGNNS 347
                                              |..||.|     .|..|...:....:...:.
  Rat    72 ----------------------------------PTTATVPSFFSKSSDFPQDPSCLEDLSNASV 102

  Fly   348 MMEAVQKL--IAMNPEYLTSGIPN---TVFQMFMQSMQRPQATPSPNQPM----NPGAMVTSAAA 403
            ...:|..|  |...|::|.:...|   |::.:...|..|.:.. .|:.|.    :|...|:|...
  Rat   103 FSSSVDSLSDIPDTPDFLPADSLNEVPTIWDVSTTSTTRDKLF-LPSVPFSALEDPVTAVSSTPL 166

  Fly   404 AAAHASAVAYVQQE-EDEVDYEEMGVAETYADYWPAKLKLGKKHPDAVVETASLSSVEPCDVYYK 467
            ..::.|.....::| |||.:.||:|.|||||||.|:|.|:||:|||.||||::||||.|.|:.|.
  Rat   167 LVSYQSHSQPEEEEGEDEEEAEELGHAETYADYVPSKSKIGKQHPDRVVETSTLSSVPPPDITYT 231

  Fly   468 LSLPLETINSGHLSALQLESITYASQAHDHLLPDGSRAGFLIGDGAGVGKGRTIAGIIYENYLKG 532
            |:||  |.::|.|||||||:||||.|.|:.|||.|.|||||||||||||||||:||||.||||:|
  Rat   232 LALP--TSDNGTLSALQLEAITYACQQHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIVENYLRG 294

  Fly   533 RKKALWISVSNDLKYDAERDLSDIGATRIEVHALNKFKYAKISSDVNNNCKRGVIFSTYSALIGE 597
            ||||||.|.||||||||||||.||.|..|.||||:|.||.      :|....||:|:||||||||
  Rat   295 RKKALWFSASNDLKYDAERDLRDIEAPGIAVHALSKIKYG------DNTTSEGVLFATYSALIGE 353

  Fly   598 SNNKTGKYRSRFRQLLQWCGEDFEGLIIFDECHKAKNLCPVGSGKPTKTGQTVLELQQKLPKARV 662
            | ...|::|:|.||:||||||.|:|:|:|||||||||      ...||.|:.||:||.|||:|||
  Rat   354 S-QAGGQHRTRLRQILQWCGEAFDGVIVFDECHKAKN------ASSTKMGKAVLDLQNKLPQARV 411

  Fly   663 VYASATGASEPKNMAYMVRLGLWGQGTAFGNFNDFITAVERRGVGAMEIVAMDMKLRGMYIARQL 727
            |||||||||||:||.||.|||:||:||.|..|.:|:.|:|:||||||||||||||:.||||||||
  Rat   412 VYASATGASEPRNMIYMSRLGIWGEGTPFRTFEEFLHAIEKRGVGAMEIVAMDMKVSGMYIARQL 476

  Fly   728 SFKGVSFKIEEVPLSKEFRKIYDQSVELWVEAMQKFTEAAELIDAESRMKKTMWGQFWSSHQRFF 792
            ||.||:|:|||:|||..|.::|:::..||.||:..|.:||:.|..|||  |::||||||:|||||
  Rat   477 SFSGVTFRIEEIPLSPVFEQVYNRAARLWAEALSVFQQAADWIGLESR--KSLWGQFWSAHQRFF 539

  Fly   793 KYLCIAAKVNHAVLVARESIKYGKCVVIGLQSTGEARTLDQLERDDGELTDFVSTAKGVFQSFVE 857
            |||||||||:..|.:|::.:...|||||||||||||||.:.|:.::|.|..|||.|:|||.|.::
  Rat   540 KYLCIAAKVHRLVELAQQELSRDKCVVIGLQSTGEARTREVLDENEGRLDCFVSAAEGVFLSLIQ 604

  Fly   858 RHFPAPDRNRINRILGLYDETPSLSSVADSTSSLSNNSNITTAAGKRKGSNNNDNRSTKIKKKKR 922
            :|||:..|.|                              ....||||       |..:.:..|.
  Rat   605 KHFPSTRRRR------------------------------DRGGGKRK-------RRPRGRGPKA 632

  Fly   923 SGSWECSDSEDENTDMKRNRKRDGGNSNSDSDEANSDDDLKSDIDDEDE---DHDVDSDQRSVAS 984
            |               :...:..|....||.....||..|.||.:...|   |.||      |..
  Rat   633 S---------------RLTLEAAGVIRISDGSSTESDAGLDSDFNSSPESLVDDDV------VIV 676

  Fly   985 DASSDFNPFFSGSDSDIDPWVNARSKKSKKAQKKSKKKVKKEKTKKEITTSSATDPSGSTAMSAT 1049
            ||.:                                                             
  Rat   677 DAPT------------------------------------------------------------- 680

  Fly  1050 VVAALNAVKNRKSQLSTQDKIQDLLQKKQELKGTVTPVGVNGVKLNYGPPPKDAIERACTMKEEL 1114
                          |.|.|: ..|...:::|:|.       ||           :||...:|:.|
  Rat   681 --------------LPTDDR-GPLYPLQRDLQGP-------GV-----------LERVERLKQGL 712

  Fly  1115 LRKIERLGARLPPNTLDQLIDELGGPDNVAEMTGRRGRVVQTDDGSIQYESRTESDVPLETLNIT 1179
            |.|:..||..||.|||||||.:||||:.|||||||:||||...|||:.:|||.|..:.::.:|:.
  Rat   713 LAKVRALGRELPVNTLDQLIHQLGGPECVAEMTGRKGRVVSRPDGSVVFESRAEQGLSIDHVNLR 777

  Fly  1180 EKQRFMDGEKDVAIISEAASSGISLQSDRRVFNQRRRVHITLELPWSADRAIQQFGRTHRSNQVN 1244
            ||||||.|||.|||||||:|||:|||:||||.|||||||:||||||||||||||||||||||||:
  Rat   778 EKQRFMSGEKLVAIISEASSSGVSLQADRRVQNQRRRVHMTLELPWSADRAIQQFGRTHRSNQVS 842

  Fly  1245 APEYIFLISDLAGERRFASTVAKRLESLGALTHGDRRATETRDLSQFNIDNKYGRQALETVMRTI 1309
            ||||:||||:|||||||||.||||||||||||||||||||:||||::|.:||||.:||..|:.||
  Rat   843 APEYVFLISELAGERRFASIVAKRLESLGALTHGDRRATESRDLSKYNFENKYGARALSRVLATI 907

  Fly  1310 MGYESPLVPPPTDYSG---EFFKDIAGALVGVGIIVNSESHPGVLSLDKDYNNISKFLNRILGCP 1371
            ||..:..||.|..|.|   .||:|:...|:.|| |.:.||..|.|.::||. :|:||||||||..
  Rat   908 MGQTNNRVPLPQGYPGGDAAFFRDMKQGLLSVG-IGSRESRSGCLDVEKDC-SITKFLNRILGLE 970

  Fly  1372 VDLQNRLFKYFTDTMTAIIQQAKRGGRFDLGILDLGAAGENVTRVRLIRFVRKHATGV--AP--- 1431
            |..||.||:||:||...:|:..|:.||:|:||||| |.|        |..:.:.:..|  ||   
  Rat   971 VHKQNALFQYFSDTFDHLIEIDKKEGRYDMGILDL-APG--------INEIHEESQQVFLAPGHP 1026

  Fly  1432 ----TEMHTVRVERGMIWQEAIDKYADLFNENEGFYLSHQLRNQKRTAIMVVILESRNSSSTSST 1492
                ...:.:.|:|||.|:||..:..:|....:|||||:::|..|.:.::..  ::|....|   
  Rat  1027 QDGQVVFYKISVDRGMKWEEAFTRSLELKGPYDGFYLSYKVRGSKTSCLLAE--QNRGDYFT--- 1086

  Fly  1493 TDLDSGSKKKKTHSKKEIMCQIYRPNTGLQVRHESLFELEKKYRKVASEEAEPHWTEQYDASVNT 1557
                                 :|:||.|.|.:.|:|..|.:|:.:|..|||...|...|..|:..
  Rat  1087 ---------------------VYKPNIGRQSQLETLDNLCRKFHRVTPEEAREPWESSYALSLEH 1130

  Fly  1558 CSHAYWNGNCRNVSLGNDCEVGLRQRLYHVLAGSVLSVWGRVEHIL-NTRSNSKMQVIRMKTTEG 1621
            |||..||..||....|..|..|||.|.:::|.|::|.||||:..:: :..|:|.:|::|:||.:.
  Rat  1131 CSHTTWNQRCRLAQEGKCCAQGLRLRHHYMLCGALLRVWGRIAAVMADVSSSSYLQIVRLKTKDK 1195

  Fly  1622 EKIVGTLIPKSCFEPLVADLR-SDSE 1646
            :|.||..||:.|...::.:|: .|:|
  Rat  1196 KKQVGIKIPEGCVHRVLQELQLMDAE 1221

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snoNP_001096967.1 AAA_34 448..751 CDD:290583 201/302 (67%)
Helicase_C_4 1128..1405 CDD:290582 183/279 (66%)
Sbno2XP_006240970.1 AAA_34 212..500 CDD:290583 201/302 (67%)
Helicase_C_4 726..1004 CDD:290582 183/279 (66%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166352081
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 1044 1.000 Inparanoid score I247
OMA 1 1.010 - - QHG59957
OrthoDB 1 1.010 - - D112455at33208
OrthoFinder 1 1.000 - - FOG0002373
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_102140
Panther 1 1.100 - - O PTHR12706
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1569
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.910

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