DRSC/TRiP Functional Genomics Resources

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Protein Alignment Bap60 and smarcd2

DIOPT Version :9

Sequence 1:NP_511143.2 Gene:Bap60 / 32268 FlyBaseID:FBgn0025463 Length:515 Species:Drosophila melanogaster
Sequence 2:NP_001039267.1 Gene:smarcd2 / 734143 XenbaseID:XB-GENE-489103 Length:480 Species:Xenopus tropicalis


Alignment Length:514 Identity:294/514 - (57%)
Similarity:357/514 - (69%) Gaps:52/514 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 PGQAPVQSRYQPPPPA--PGMRPYPPPGASFPPRGFPLHPNTTQPVPGTANVAGVPGVPGVPGVP 69
            |..:|:.....|.|.|  |.|.||..||         :.|.:..|:||..     .|.|.:|...
 Frog    10 PSGSPMNMMRGPNPGAYRPPMGPYQRPG---------MLPGSRMPMPGMH-----MGSPMLPPYG 60

  Fly    70 GPSLLQRAAQQPGFQSSLRG---TGAGGGGVGSGGGSKRSNESRSLGGGGSKSDFATAKKKKKLA 131
            |.|.: |.|..|......|.   |.:|..|.....|.||                      :|:|
 Frog    61 GGSPM-RPAMNPMIMEPFRKRLLTPSGHPGPSHRRGVKR----------------------RKMA 102

  Fly   132 EKILPQKVRDLVPESQAYMDLLTFERKLDATIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPSK 196
            :|||||::|:||||||||||||.||||||.||.|||::||||:|:|:.|||||||:||||:.|:|
 Frog   103 DKILPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTYTPAK 167

  Fly   197 EPTNDGEEG-AVASWELRVEGRLLEDGKGDPNTKIKRKFSSFFKSLVIELDKELYGPDNHLVEWH 260
            .   ||||. .|:||||||||:||||     .:|.|||||||||||||||||:||||||||||||
 Frog   168 P---DGEESERVSSWELRVEGKLLED-----PSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWH 224

  Fly   261 RTHTTQETDGFQVKRPGDRNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIK 325
            |..|||||||||||||||.||:||:||:||:||.|:|||||||||||||||||..|:.|||.|||
 Frog   225 RMATTQETDGFQVKRPGDVNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRANIMQALWLYIK 289

  Fly   326 THKLQDAHEREYINCDKYLEQIFSCQRMKFAEIPQRLNPLLHPPDPIVINHFIE-SGAENKQTAC 389
            |:||||:||:|:|||::|..|||:|.||||::||.:|..||..||||:|||.|. ...:.|:|||
 Frog   290 TNKLQDSHEKEHINCNRYFRQIFNCMRMKFSDIPMKLAGLLQHPDPIIINHTISVDPNDQKKTAC 354

  Fly   390 YDIDVEVDDTLKNQMNSFLMSTASQQEIQGLDTKIHETVDTINQMKTNREFFLSFAKDPQMFIHR 454
            |||:|||||.||.||::||.||.:||||..||:|||||:::||.:||.|:|.|||:.|||.||..
 Frog   355 YDIEVEVDDPLKGQMSNFLASTTNQQEIANLDSKIHETIESINTLKTQRDFMLSFSNDPQEFIQD 419

  Fly   455 WIISETRDLKLMTDVAGNPEEERRAEFYYQPWTHEAVSRYFFTKVNQKRAELEQALGIR 513
            |:.|::||||:|||..|||||||..|||.|||..|||.|:.|.||.|:|.||||.||:|
 Frog   420 WLKSQSRDLKIMTDTMGNPEEERHTEFYQQPWAQEAVGRHIFFKVQQRRQELEQVLGLR 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Bap60NP_511143.2 SWIB_BAF60A 295..371 CDD:349493 51/75 (68%)
smarcd2NP_001039267.1 Forkhead_N 8..>72 CDD:369872 22/76 (29%)
Rsc6 177..374 CDD:227818 143/201 (71%)
SWIB_BAF60B 256..335 CDD:349494 53/78 (68%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 277 1.000 Domainoid score I1691
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1027566at2759
OrthoFinder 1 1.000 - - FOG0000716
OrthoInspector 1 1.000 - - otm47986
Panther 1 1.100 - - O PTHR13844
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1401
SonicParanoid 1 1.000 - - X681
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.140

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