DRSC/TRiP Functional Genomics Resources

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Protein Alignment Bap60 and SMARCD3

DIOPT Version :9

Sequence 1:NP_511143.2 Gene:Bap60 / 32268 FlyBaseID:FBgn0025463 Length:515 Species:Drosophila melanogaster
Sequence 2:XP_024302654.1 Gene:SMARCD3 / 6604 HGNCID:11108 Length:525 Species:Homo sapiens


Alignment Length:535 Identity:303/535 - (56%)
Similarity:376/535 - (70%) Gaps:79/535 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 GMRPYPPPGASFPPRGFPLHPNTTQPVPGTANVAGVPGV-PGVPGVPGPSLLQRAAQQPGFQSSL 87
            |:||..|.||..|.:|.|:.|      ||:..: |.|.| ||:.........:|||..|| ||..
Human    25 GVRPGMPSGARMPHQGAPMGP------PGSPYM-GSPAVRPGLAPAGMEPARKRAAPPPG-QSQA 81

  Fly    88 RGTGAGGGGVGSGGGSKRSNESRSLGGGGSKSDFATAKKKKKLAEKILPQKVRDLVPESQAYMDL 152
            :..|.   .|.:.....||                  .|::|:|:|||||::|:|||||||||||
Human    82 QSQGQ---PVPTAPARSRS------------------AKRRKMADKILPQRIRELVPESQAYMDL 125

  Fly   153 LTFERKLDATIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPSKEPTNDGEEGAVASWELRVEGR 217
            |.||||||.||||||:|||||||||||||||||::|||||.|:| |..:..:|::|||||||||:
Human   126 LAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAK-PDAEDSDGSIASWELRVEGK 189

  Fly   218 LLEDGKGDPNTKIKRKFSSFFKSLVIELDKELYGPDNHLVEWHRTHTTQETDGFQVKRPGDRNVR 282
            ||:|     .:|.|||||||||||||||||:||||||||||||||.|||||||||||||||.:||
Human   190 LLDD-----PSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVR 249

  Fly   283 CTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREYINCDKYLEQI 347
            ||:||:|||||.|||||||||||||:|||:|..|:.|||||:||::|||:|::||||.|||.:||
Human   250 CTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQI 314

  Fly   348 FSCQRMKFAEIPQRLNPLLHPPDPIVINHFIE-SGAENKQTACYDIDVEVDDTLKNQMNSFLMST 411
            |.|.|:||:||||||..||.|||||||||.|. ..::.|:||||||||||::.||.||:|||:||
Human   315 FDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLST 379

  Fly   412 ASQQEIQGLDTKIHETVDTINQMKTNREFFLSFAKDPQMFIHRWIISETRDLK------------ 464
            |:||||..||:|||||:::|||:|..|:|.|||::||:.::...:.|::||||            
Human   380 ANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVKRETQGVLEWK 444

  Fly   465 ------------------------------LMTDVAGNPEEERRAEFYYQPWTHEAVSRYFFTKV 499
                                          :|||||||||||||||||:|||:.|||||||:.|:
Human   445 TSTAGKRVNVVLQGQVRGFRAQGSPHAPSQVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKI 509

  Fly   500 NQKRAELEQALGIRN 514
            .|:|.||||:|.:||
Human   510 QQRRQELEQSLVVRN 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Bap60NP_511143.2 SWIB_BAF60A 295..371 CDD:349493 53/75 (71%)
SMARCD3XP_024302654.1 Cytadhesin_P30 <27..67 CDD:284643 16/46 (35%)
DUF4106 <28..>138 CDD:315952 55/138 (40%)
SWIB 259..335 CDD:128456 53/75 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 286 1.000 Domainoid score I1605
eggNOG 1 0.900 - - E1_COG5531
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 629 1.000 Inparanoid score I858
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55104
OrthoDB 1 1.010 - - D1027566at2759
OrthoFinder 1 1.000 - - FOG0000716
OrthoInspector 1 1.000 - - otm40795
orthoMCL 1 0.900 - - OOG6_100964
Panther 1 1.100 - - O PTHR13844
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1401
SonicParanoid 1 1.000 - - X681
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1413.870

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