DRSC/TRiP Functional Genomics Resources

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Protein Alignment Bap60 and smarcd3a

DIOPT Version :9

Sequence 1:NP_511143.2 Gene:Bap60 / 32268 FlyBaseID:FBgn0025463 Length:515 Species:Drosophila melanogaster
Sequence 2:XP_005163573.1 Gene:smarcd3a / 564652 ZFINID:ZDB-GENE-070912-491 Length:518 Species:Danio rerio


Alignment Length:519 Identity:319/519 - (61%)
Similarity:376/519 - (72%) Gaps:56/519 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 GMRPYPPPGASFPPRGFPLHP------NTTQPVPGTANVAGVPG----VPGVPGVPGPSLLQRAA 78
            |:||....||..|.:|.|:.|      .|.|..||..|.|..|.    .|..|..| ||:..|:.
Zfish    25 GVRPGMTSGARMPHQGAPMGPPGPPYGGTPQIRPGMPNPALDPNRKRPAPTQPVQP-PSVQNRSR 88

  Fly    79 QQP-GFQSSLRGTGAGGGGVGSGGGSKRSNE--SRSLGGGGSKSDFATAK--KKKKLAEKILPQK 138
            ::| ||.:                    :||  :|.:....::||.|...  |::|:|:|||||:
Zfish    89 KKPLGFPA--------------------ANEISARQMDMREAQSDPAIGSNAKRRKMADKILPQR 133

  Fly   139 VRDLVPESQAYMDLLTFERKLDATIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPSKEPTNDGE 203
            :|:||||||||||||.||||||.||||||:|||||||||||||||||::|||||.|:|..|.| .
Zfish   134 IRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDTED-S 197

  Fly   204 EGAVASWELRVEGRLLEDGKGDPNTKIKRKFSSFFKSLVIELDKELYGPDNHLVE---------- 258
            ||::|||||||||:||:    ||. |.|||||||||||||||||:||||||||||          
Zfish   198 EGSIASWELRVEGKLLD----DPG-KQKRKFSSFFKSLVIELDKDLYGPDNHLVEIALKHAAKIG 257

  Fly   259 ---WHRTHTTQETDGFQVKRPGDRNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISAL 320
               ||||.|||||||||||||||.|||||:||:|||||.|||||||||||||:|||||..||.||
Zfish   258 ETQWHRTPTTQETDGFQVKRPGDVNVRCTLLLMLDYQPPQFKLDPRLARLLGIHTQTRSCIIQAL 322

  Fly   321 WQYIKTHKLQDAHEREYINCDKYLEQIFSCQRMKFAEIPQRLNPLLHPPDPIVINHFIE-SGAEN 384
            |||:||:||||:||:||||||||.:|||.|.|:||.||||||..||.|||||||||.|. ...:.
Zfish   323 WQYVKTNKLQDSHEKEYINCDKYFQQIFDCPRLKFCEIPQRLTNLLLPPDPIVINHIISVDPNDQ 387

  Fly   385 KQTACYDIDVEVDDTLKNQMNSFLMSTASQQEIQGLDTKIHETVDTINQMKTNREFFLSFAKDPQ 449
            |:||||||||||||.||.|||.||:|||:||||..||.|||||:::|||:|..|:|.|||::||:
Zfish   388 KKTACYDIDVEVDDPLKGQMNGFLLSTANQQEIASLDNKIHETIESINQLKIQRDFMLSFSRDPK 452

  Fly   450 MFIHRWIISETRDLKLMTDVAGNPEEERRAEFYYQPWTHEAVSRYFFTKVNQKRAELEQALGIR 513
            .:|..||.|:.||||||||..||||||||||||.|||:.|||||||:.|:.|:|.||||||.:|
Zfish   453 GYIQDWICSQNRDLKLMTDTVGNPEEERRAEFYNQPWSQEAVSRYFYCKIQQRRQELEQALAMR 516

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Bap60NP_511143.2 SWIB_BAF60A 295..371 CDD:349493 58/75 (77%)
smarcd3aXP_005163573.1 Rsc6 201..411 CDD:227818 156/214 (73%)
SWIB 297..368 CDD:280380 54/70 (77%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 280 1.000 Domainoid score I1639
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 629 1.000 Inparanoid score I828
OMA 1 1.010 - - QHG55104
OrthoDB 1 1.010 - - D1027566at2759
OrthoFinder 1 1.000 - - FOG0000716
OrthoInspector 1 1.000 - - otm26106
orthoMCL 1 0.900 - - OOG6_100964
Panther 1 1.100 - - O PTHR13844
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1401
SonicParanoid 1 1.000 - - X681
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1212.010

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