DRSC/TRiP Functional Genomics Resources

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Protein Alignment Bap60 and smarcd3

DIOPT Version :9

Sequence 1:NP_511143.2 Gene:Bap60 / 32268 FlyBaseID:FBgn0025463 Length:515 Species:Drosophila melanogaster
Sequence 2:XP_031759797.1 Gene:smarcd3 / 100495941 XenbaseID:XB-GENE-494884 Length:341 Species:Xenopus tropicalis


Alignment Length:329 Identity:164/329 - (49%)
Similarity:203/329 - (61%) Gaps:68/329 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 GMRPYPPPGASFPPRGFPLHPNTTQPVPGTANVAGVPGV-PGVPGVPGPSLLQ---RAAQQPGFQ 84
            |:||..|.||..|.:|.|:.|      ||.. ..|.|.| ||:|    |::|:   :.:..|..|
 Frog    58 GVRPGMPSGARMPHQGAPMGP------PGPP-FGGSPSVRPGIP----PAVLEPTRKRSAPPQVQ 111

  Fly    85 SSLRGTGAGGGGVGSGGGSKRSNESRSLGGGGSKSDFATAKKKKKLAEKILPQKVRDLVPESQAY 149
            .....|               ...|||             .|::|:|:|||||::|:||||||||
 Frog   112 QQATPT---------------QGRSRS-------------AKRRKMADKILPQRIRELVPESQAY 148

  Fly   150 MDLLTFERKLDATIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPSKEPTNDGEEGAVASWELRV 214
            ||||.||||||.||||||:|||||||||||||||||::|||||.|:|...:| .:|::|||||||
 Frog   149 MDLLAFERKLDQTIMRKRIDIQEALKRPMKQKRKLRLYISNTFNPAKADADD-SDGSIASWELRV 212

  Fly   215 EGRLLEDGKGDPNTKIKRKFSSFFKSLVIELDKELYGPDNHLVEWHRTHTTQETDGFQVKRPGDR 279
            ||:||:|     .:|:|||||||||||||||||:||||||||||||||.:||||||||||||||.
 Frog   213 EGKLLDD-----PSKMKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPSTQETDGFQVKRPGDV 272

  Fly   280 NVRCTILLLLDYQ------PL-----QFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAH 333
            :||||:||:||||      ||     .:.|.|.:......:.:.|...||.|        ..|.:
 Frog   273 SVRCTLLLMLDYQVRTAVLPLCTPIYPYGLKPNMLNCAMTYIRERTTDISLL--------RHDLY 329

  Fly   334 EREY 337
            :|.|
 Frog   330 KRTY 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Bap60NP_511143.2 SWIB_BAF60A 295..371 CDD:349493 9/43 (21%)
smarcd3XP_031759797.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 277 1.000 Domainoid score I1691
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D262640at33208
OrthoFinder 1 1.000 - - FOG0000716
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR13844
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1401
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.140

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