DRSC/TRiP Functional Genomics Resources

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Protein Alignment HOXC10 and lms

DIOPT Version :10

Sequence 1:NP_059105.2 Gene:HOXC10 / 3226 HGNCID:5122 Length:342 Species:Homo sapiens
Sequence 2:NP_611491.2 Gene:lms / 37322 FlyBaseID:FBgn0034520 Length:378 Species:Drosophila melanogaster


Alignment Length:186 Identity:45/186 - (24%)
Similarity:78/186 - (41%) Gaps:32/186 - (17%)


- Green bases have known domain annotations that are detailed below.


Human   154 SYSALDKTPHCSGANDFEAPFEQRASLNPRAEHLESPQLGGKVSFPETPKSDSQTPSPNEIKTEQ 218
            |.||:.:.||.......                |..|::....||.::.:.:|            
  Fly     3 SQSAVRRYPHSFSIEQI----------------LAKPEMRSSTSFEDSVQDES------------ 39

Human   219 SLAGPKGSPSESEKERAKAADSSPDTSDNEAKEEIKAENTTGNWLTAKSGRKKRCPYTKHQTLEL 283
               |..|:...:.:..:.|..|..|.:.::.|.:|...:..||.|.....::.|..::..|...|
  Fly    40 ---GRGGNCLGASRASSPATSSCLDDNMDDGKSDIDLASDDGNGLGDDRKKRPRTAFSAAQIKAL 101

Human   284 EKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRENRIRELTSNF 339
            |.||....||:..:|..::|.:.||:.|:||||||||.|.|:....: :..|.|::
  Fly   102 ETEFERGKYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRKYTSD-VETLASHY 156

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HOXC10NP_059105.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..29
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 187..271 15/83 (18%)
Homeodomain 269..325 CDD:459649 22/55 (40%)
lmsNP_611491.2 Cnd2 33..>106 CDD:450400 16/87 (18%)
Homeodomain 87..143 CDD:459649 22/55 (40%)
Blue background indicates that the domain is not in the aligned region.

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