DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Chpf and Csgalnact

DIOPT Version :10

Sequence 1:NP_572853.2 Gene:Chpf / 32259 FlyBaseID:FBgn0263005 Length:819 Species:Drosophila melanogaster
Sequence 2:NP_610567.1 Gene:Csgalnact / 36079 FlyBaseID:FBgn0033500 Length:540 Species:Drosophila melanogaster


Alignment Length:574 Identity:94/574 - (16%)
Similarity:200/574 - (34%) Gaps:160/574 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   308 FSELAKEEAFRNASTVYPVQTPEDFYRLHAYYSKHHLEKVQERGYALEQKSYRIAN----GSISN 368
            |.||...|...|    .|.::....|.|..  .:..:|::::...||..:...:.|    ...||
  Fly    33 FDELTTRETQAN----NPSESSGFSYTLSE--REAEIERLKQEVLALRTQILFLQNNRSTAKPSN 91

  Fly   369 KILEIRWPLGVPPPSAPETRH--------------DILTWQLLNGTHNFLPNGNAEHAVATLSRI 419
            ..|::: .....||:||...|              :||....||..:..:|..:     .|.:|:
  Fly    92 GSLQLQ-ETTAGPPTAPLGHHYDCSSYIRKQVGAAEILHGLPLNNEYELIPYNH-----FTFTRV 150

  Fly   420 EAQDFA---KVLEIALQY------AALKHPRLSYHSLHSA------------------------- 450
            ...|..   :|:|..:.|      .|:.....|.:..|||                         
  Fly   151 YPIDLGLGKRVVEKPIGYRRRDLIEAVNKALESLNRNHSARIRAKGAGSAAAYASDVIKYTLDDF 215

  Fly   451 ----YRKFDATRGMDYQLHL-NLQEGSGRSRRLVIKSFEVVKPLGRVEVVPSPYVTESTRIAMLV 510
                ||. :.|.|..|:|:. :::..:...||.:     |::|...::.|....::.|...:...
  Fly   216 IEGIYRN-EPTTGTQYELYFQSVKHQASPVRRAL-----VMRPFAPLQTVQLSELSSSVDNSGAP 274

  Fly   511 PAFEHQVPDALL-----------FVEQYERICMQNQDNTFLLLIFMYRLESPSKGDEDPFKALKT 564
            |:....:...:|           |::.:.::    :|....|::..:......:......::.:|
  Fly   275 PSHSPPIIHVILPLAGRLHSFRGFLQMFAKL----EDRRLELIVVYFGTSGLEQARSLAGRSQRT 335

  Fly   565 LALDLSSKYKTDGSRIAWVSIRLPEQLSEPVDPQSWLLHASMYGPRQLLSLVVADLALPKLGLES 629
            ..|.|:..:    ||..  ::||..:..:|.:.                              :.
  Fly   336 QFLALNETF----SRAK--ALRLGAEHIQPAEE------------------------------DV 364

  Fly   630 LVLLATPGMVFKADFLNRVRMNTIQGFQVYAPIGFQMYPCRWAHFCR------ECDTCDVSQSSG 688
            |:.:....::|...||.|.|.|...|.:||.|:.|.:|.....:..:      |.:...:|:.:|
  Fly   365 LLFMCDVDIMFTTKFLERCRWNAAPGKKVYYPVVFSLYNPHVVYSLQGKPLPSEEEQLVISRDTG 429

  Fly   689 YFDRHNHDVIAFYSRDYVQARKLLHPQGLPIIRSDLDIDQLLLQPGEETRPPGVESILDMFVAAQ 753
            ::....:.:...|..::::.|             ..|.::::...||:.      .:...:|.::
  Fly   430 FWRDFGYGMTCQYRSNFLKVR-------------GFDEEEIVGWGGEDV------MLYRKYVRSK 475

  Fly   754 HSVHILRGVEPNL--RFGQDVRNHLARGGTLPQSVPERCGREQCIHLASRKQIG 805
              :.|:|..:|.:  |:...:.:     .:|.......|.|.:.::.||..|:|
  Fly   476 --IKIIRATDPGIFHRWHTKICS-----SSLTADQYRACIRSRALNEASHAQLG 522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ChpfNP_572853.2 CHGN 254..804 CDD:461712 92/571 (16%)
CsgalnactNP_610567.1 CHGN <134..521 CDD:461712 69/463 (15%)

Return to query results.
Submit another query.