DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lic and sek-4

DIOPT Version :9

Sequence 1:NP_477162.1 Gene:lic / 32257 FlyBaseID:FBgn0261524 Length:334 Species:Drosophila melanogaster
Sequence 2:NP_508915.3 Gene:sek-4 / 180811 WormBaseID:WBGene00018035 Length:364 Species:Caenorhabditis elegans


Alignment Length:298 Identity:96/298 - (32%)
Similarity:153/298 - (51%) Gaps:27/298 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 IQIGDRTFDIDADSLEKICDLGRG-----AYGIVDKMRHKQTDTVLAVK----RIPMTVNIREQH 87
            |.:..|..::..|.|.....:|.|     .|.::      ....|:|.|    |:|...:....:
 Worm    34 ICLSGRNLNVPEDMLHGGVRIGSGEGQSAVYRLI------YNGMVIARKDVAVRLPQGGDEDSTN 92

  Fly    88 RL----VMDLDISMRSSDCPYTVHFYG-AMYREGD---VWICMEVMSTSLDKFYPKVFLHDLRME 144
            :|    :.::::....:.||:.|||:| .:::..|   :.|.||.|:.|......:|......:.
 Worm    93 KLMAKRLREVNVINGCAPCPFIVHFFGYYVHKYKDCVKIHIFMEEMALSASVLKKEVLKRGGIVP 157

  Fly   145 ESVLGKIAMSVVSALHYLHAQLKVIHRDVKPSNILINRAGQVKICDFGISGYLVDSIAKTIDAGC 209
            |.|:|:||.||:.|:.:|..::::||||:||.||||:..|:||||||||||.|.||||.:. .||
 Worm   158 EFVIGRIACSVIHAMWFLKEKMQIIHRDIKPGNILIDYDGRVKICDFGISGILQDSIAVSA-TGC 221

  Fly   210 KPYMAPE--RIDPQGNPAQYDIRSDVWSLGIGMIEMATGRYPYDNWRTPFEQLRQVVEDSPPRLP 272
            :.|.|||  .:....:|. |.|:||:|||||.:.|:||..|||....:.|.....::....|.|.
 Worm   222 QQYTAPEINELAMVHSPG-YSIKSDIWSLGITIFELATLTYPYPVGISEFTLSSTIMTSPAPSLE 285

  Fly   273 EGTFSPEFEDFIAVCLQKEYMARPNYEQLLKHSFIVEH 310
            .|.:|....:|:...|||....||:...:.:..|.|::
 Worm   286 RGIYSDSLVEFVERLLQKNKDDRPSIVAVQELKFFVKN 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
licNP_477162.1 PKc_MKK3_6 44..326 CDD:173729 94/286 (33%)
sek-4NP_508915.3 PKc_like 57..324 CDD:389743 91/275 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0984
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S1024
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR48013
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.820

Return to query results.
Submit another query.