DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rsh and Sipa1

DIOPT Version :10

Sequence 1:NP_001285176.1 Gene:rsh / 32253 FlyBaseID:FBgn0265597 Length:1799 Species:Drosophila melanogaster
Sequence 2:NP_001004089.2 Gene:Sipa1 / 361710 RGDID:1303184 Length:1040 Species:Rattus norvegicus


Alignment Length:721 Identity:200/721 - (27%)
Similarity:274/721 - (38%) Gaps:217/721 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   394 GGSRRGSQPALSPDPPDDCERRTSRRDSLSPDSASRGGRRDSRTHLSPDRSHERDGSPRRHTLRR 458
            |..|||..||    |.||...|..|:.:..|              |:|   |..:..|.|..|.|
  Rat     7 GSPRRGMAPA----PTDDLFARKLRQPARPP--------------LTP---HTFEPRPARGPLLR 50

  Fly   459 QSSSAARSPRSPDSNSCCSSRDPSPCSRPQTQTTVEQNQRPAIRRQSTTEEILIARGF---RRQS 520
            ..|.|.            ..|.|:|.|......:.|...|||........:.|...|.   ..:.
  Rat    51 SGSDAG------------EVRPPTPASPRARAHSHEDTSRPAATPTRLFTDPLALLGLPAEEPEP 103

  Fly   521 TTEEMIRCRNFRRQSSQS---DDVCRYRGRRDSSAQIIDGTIGTMTVETTSTFFDSSTQTEPSPL 582
            |...::..|.|.....||   |...|.|            ..|:.|...:.|...:..||..|.|
  Rat   104 TFPPVLEPRWFAHYDVQSLLFDWAPRPR------------ATGSHTESNSGTLALAEDQTTTSDL 156

  Fly   583 YDNNHYHEECLRCNSCGLNLTGPNQKRARRFKNQILCDLHFADVALMECSDFMQQLRSFKPQSLG 647
                                                         |:....|:.:|.......||
  Rat   157 ---------------------------------------------LLGAPGFVSELGGEGELGLG 176

  Fly   648 CAVARRKSSTTLIFPLPPQACSDEFCEEYPHNLMPTPGYWIECSRQKITMPTPHTIWDESDSEHE 712
            ..::.         |:||                ..|...:....:..|..|.:::      ||.
  Rat   177 GPISP---------PVPP----------------ALPNASVSVLEEPQTRTTAYSL------EHA 210

  Fly   713 DIRAGSASDAYLERECSDLYEDDEDSEATPSPRKKTTIEEQWDQQGAFELISVEQETYEKYFYGT 777
            |:.||                                                   .|.|||||.
  Rat   211 DLGAG---------------------------------------------------YYRKYFYGK 224

  Fly   778 EHWNYFTSDEDLGPVILSIKQETLNGR-----DQFRILVRAGSY-TVHGLIPASCV-------FA 829
            ||.|:|..||.||||.:|:::|...|.     ..:|::||.... |:.|.|....:       .:
  Rat   225 EHQNFFGLDEALGPVAVSLRREEKEGSGGGTLHSYRVIVRTTQLRTLRGTISEDALPPGPPRGLS 289

  Fly   830 DRYNREEVVRSLGKEVNLNPP-LTLGQL-PDTPEELLKLDQVFIKSELKVGVIFVKEDQYTEEQI 892
            .|...|.|.      ..|:|. |.||.. |..|..||.||:..:..:.|||:::.:..|.:||::
  Rat   290 PRKLLEHVA------PRLSPTCLRLGSASPKVPRTLLTLDEQVLSFQRKVGILYCRAGQGSEEEM 348

  Fly   893 LDNNENSPLFDEFLTLLGDRVRLRGFDKYKGGLDTVHDLTGLFSVYTNWRNIEIMFHVSTLLPYE 957
            .:|.|....|.:|||||||.|||:||:.|:..|||..|.||..|:||.:::.||||||||:|||.
  Rat   349 YNNQEAGAAFMQFLTLLGDVVRLKGFENYRAQLDTKTDSTGTHSLYTTYQDHEIMFHVSTMLPYT 413

  Fly   958 KHDPQKLQRKRHIGNDIVCVVFLEADNTRFSPACIKSHFLHTFILVRVSARIKHKP----TRYEV 1018
            .::.|:|.||||||||||.:||.|..:..|.|..|:|||.|.|::||.     |.|    |.|.|
  Rat   414 PNNQQQLLRKRHIGNDIVTIVFQEPGSKPFCPTTIRSHFQHVFLVVRA-----HAPCTPHTSYRV 473

  Fly  1019 SVVTRDEVGAYKPYLWEQSVFEKGPM-----FREWLLTKIVNGERASYSAPKFARMQERTRSQML 1078
            :|....:..|:.|.|.|..    ||.     ||.:||.|.:|||:|:..|.:|..|..|||.|.|
  Rat   474 AVSRTQDTPAFGPALPEGG----GPFAANADFRAFLLAKALNGEQAAGHARQFHAMATRTRQQYL 534

  Fly  1079 EDLVMN 1084
            :||..|
  Rat   535 QDLATN 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rshNP_001285176.1 PHA03309 <207..539 CDD:165564 36/150 (24%)
LIM <583..623 CDD:259829 0/39 (0%)
Rap_GAP 893..1074 CDD:460463 86/189 (46%)
BTB_POZ 1289..>1344 CDD:453885
BTB <1467..1526 CDD:197585
BACK 1531..1603 CDD:475122
Sipa1NP_001004089.2 PHA03378 <29..>112 CDD:223065 21/111 (19%)
Rap_GAP 349..530 CDD:460463 86/189 (46%)
PDZ_SIPA1-like 685..757 CDD:467227
YhaN <903..>1025 CDD:443752
ZapB 972..1028 CDD:428718
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.