DRSC/TRiP Functional Genomics Resources

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Protein Alignment rad and Sipa1

DIOPT Version :9

Sequence 1:NP_001285176.1 Gene:rad / 32253 FlyBaseID:FBgn0265597 Length:1799 Species:Drosophila melanogaster
Sequence 2:NP_001004089.1 Gene:Sipa1 / 361710 RGDID:1303184 Length:1040 Species:Rattus norvegicus


Alignment Length:721 Identity:200/721 - (27%)
Similarity:274/721 - (38%) Gaps:217/721 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   394 GGSRRGSQPALSPDPPDDCERRTSRRDSLSPDSASRGGRRDSRTHLSPDRSHERDGSPRRHTLRR 458
            |..|||..||    |.||...|..|:.:..|              |:|   |..:..|.|..|.|
  Rat     7 GSPRRGMAPA----PTDDLFARKLRQPARPP--------------LTP---HTFEPRPARGPLLR 50

  Fly   459 QSSSAARSPRSPDSNSCCSSRDPSPCSRPQTQTTVEQNQRPAIRRQSTTEEILIARGF---RRQS 520
            ..|.|.            ..|.|:|.|......:.|...|||........:.|...|.   ..:.
  Rat    51 SGSDAG------------EVRPPTPASPRARAHSHEDTSRPAATPTRLFTDPLALLGLPAEEPEP 103

  Fly   521 TTEEMIRCRNFRRQSSQS---DDVCRYRGRRDSSAQIIDGTIGTMTVETTSTFFDSSTQTEPSPL 582
            |...::..|.|.....||   |...|.|            ..|:.|...:.|...:..||..|.|
  Rat   104 TFPPVLEPRWFAHYDVQSLLFDWAPRPR------------ATGSHTESNSGTLALAEDQTTTSDL 156

  Fly   583 YDNNHYHEECLRCNSCGLNLTGPNQKRARRFKNQILCDLHFADVALMECSDFMQQLRSFKPQSLG 647
                                                         |:....|:.:|.......||
  Rat   157 ---------------------------------------------LLGAPGFVSELGGEGELGLG 176

  Fly   648 CAVARRKSSTTLIFPLPPQACSDEFCEEYPHNLMPTPGYWIECSRQKITMPTPHTIWDESDSEHE 712
            ..::.         |:||                ..|...:....:..|..|.:::      ||.
  Rat   177 GPISP---------PVPP----------------ALPNASVSVLEEPQTRTTAYSL------EHA 210

  Fly   713 DIRAGSASDAYLERECSDLYEDDEDSEATPSPRKKTTIEEQWDQQGAFELISVEQETYEKYFYGT 777
            |:.||                                                   .|.|||||.
  Rat   211 DLGAG---------------------------------------------------YYRKYFYGK 224

  Fly   778 EHWNYFTSDEDLGPVILSIKQETLNGR-----DQFRILVRAGSY-TVHGLIPASCV-------FA 829
            ||.|:|..||.||||.:|:::|...|.     ..:|::||.... |:.|.|....:       .:
  Rat   225 EHQNFFGLDEALGPVAVSLRREEKEGSGGGTLHSYRVIVRTTQLRTLRGTISEDALPPGPPRGLS 289

  Fly   830 DRYNREEVVRSLGKEVNLNPP-LTLGQL-PDTPEELLKLDQVFIKSELKVGVIFVKEDQYTEEQI 892
            .|...|.|.      ..|:|. |.||.. |..|..||.||:..:..:.|||:::.:..|.:||::
  Rat   290 PRKLLEHVA------PRLSPTCLRLGSASPKVPRTLLTLDEQVLSFQRKVGILYCRAGQGSEEEM 348

  Fly   893 LDNNENSPLFDEFLTLLGDRVRLRGFDKYKGGLDTVHDLTGLFSVYTNWRNIEIMFHVSTLLPYE 957
            .:|.|....|.:|||||||.|||:||:.|:..|||..|.||..|:||.:::.||||||||:|||.
  Rat   349 YNNQEAGAAFMQFLTLLGDVVRLKGFENYRAQLDTKTDSTGAHSLYTTYQDHEIMFHVSTMLPYT 413

  Fly   958 KHDPQKLQRKRHIGNDIVCVVFLEADNTRFSPACIKSHFLHTFILVRVSARIKHKP----TRYEV 1018
            .::.|:|.||||||||||.:||.|..:..|.|..|:|||.|.|::||.     |.|    |.|.|
  Rat   414 PNNQQQLLRKRHIGNDIVTIVFQEPGSKPFCPTTIRSHFQHVFLVVRA-----HAPCTPHTSYRV 473

  Fly  1019 SVVTRDEVGAYKPYLWEQSVFEKGPM-----FREWLLTKIVNGERASYSAPKFARMQERTRSQML 1078
            :|....:..|:.|.|.|..    ||.     ||.:||.|.:|||:|:..|.:|..|..|||.|.|
  Rat   474 AVSRTQDTPAFGPALPEGG----GPFAANADFRAFLLAKALNGEQAAGHARQFHAMATRTRQQYL 534

  Fly  1079 EDLVMN 1084
            :||..|
  Rat   535 QDLATN 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
radNP_001285176.1 LIM <583..623 CDD:259829 0/39 (0%)
Rap_GAP 893..1074 CDD:280332 86/189 (46%)
BTB <1464..1523 CDD:295341
BTB <1467..1526 CDD:197585
BACK 1544..1646 CDD:197943
Sipa1NP_001004089.1 Rap_GAP 349..530 CDD:280332 86/189 (46%)
PDZ 685..757 CDD:278991
DUF904 972..1028 CDD:283624
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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