DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rsh and Rap1gap

DIOPT Version :10

Sequence 1:NP_001285176.1 Gene:rsh / 32253 FlyBaseID:FBgn0265597 Length:1799 Species:Drosophila melanogaster
Sequence 2:XP_063143847.1 Gene:Rap1gap / 313644 RGDID:1309908 Length:787 Species:Rattus norvegicus


Alignment Length:646 Identity:191/646 - (29%)
Similarity:282/646 - (43%) Gaps:190/646 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   472 SNSC-----CSSRDPS---PCSRPQTQTTVEQNQRPAIRRQSTTEEILIARGFRRQSTTEEMIRC 528
            |::|     ||  ||:   |||:.:|...|    .|::                           
  Rat    24 SSACWYFQKCS--DPATTPPCSQERTLGVV----LPSV--------------------------- 55

  Fly   529 RNFRRQSSQSDDVCRYRGRRDSSAQIIDGTIGTMTVETTSTFFDSSTQTEPSPLYDNNHYHEECL 593
                        |.|..||.|........|:..:.|:        |..:.|:..|..|       
  Rat    56 ------------VSRAEGRSDGQKHSFPQTLNVLLVD--------SVPSHPASPYPKN------- 93

  Fly   594 RCNSCGLNLTGPNQKRARRFKNQILCDLHFADVALMECSDFMQQLRSFKPQSLGCAVARRKSSTT 658
                                     .|| |..:..|:.|...:|..||                 
  Rat    94 -------------------------TDL-FEMIEKMQGSRMDEQRCSF----------------- 115

  Fly   659 LIFPLPPQACSDEFCEEYP--HNLM----PTP--------GYWIECSRQKI-TMPTPHTIWDESD 708
                 ||...::|....||  |.::    |.|        |||||.:..:| ::|          
  Rat   116 -----PPPLKTEEDYIPYPSVHEVLGREGPFPLILLPQFGGYWIEGTNHEISSIP---------- 165

  Fly   709 SEHEDIRAGSASDAYLERECSDLYEDDEDSEATPSPRKKTTIEEQWDQQGAFELISVEQETYEKY 773
                                        ::|...||..|..:|           .:.....|.|:
  Rat   166 ----------------------------ETEPLQSPTTKVKLE-----------CNPTARIYRKH 191

  Fly   774 FYGTEHWNYFTSDEDLGPVILSIKQETLNGRDQFRILVRAGSYTVHGLIPASCVFADRYNREEVV 838
            |.|.||:||::.|..||.::.|:|.:.:..::..|:|:|....|.|.:||.||: .:..|..::.
  Rat   192 FLGKEHFNYYSLDTALGHLVFSLKYDVIGDQEHLRLLLRTKCRTYHDVIPISCL-TEFPNVVQMA 255

  Fly   839 RSLGKEVNLN---PPLTLGQLPDTPEELLKLDQVFIKSELKVGVIFVKEDQYTEEQILDNNENSP 900
            :.:.::||::   |.|    .|.....::..|:..|.:..|.|||:.|..|.:||::...||.||
  Rat   256 KLVCEDVNVDRFYPVL----YPKASRLIVTFDEHVISNNFKFGVIYQKLGQTSEEELFSTNEESP 316

  Fly   901 LFDEFLTLLGDRVRLRGFDKYKGGLDTVHDLTGLFSVYTNWRNIEIMFHVSTLLPYEKHDPQKLQ 965
            .|.|||..||.:|:|:.|..::||||..|..||..|||.|:||.||||||||.|||.:.|.|:||
  Rat   317 AFVEFLEFLGQKVKLQDFKGFRGGLDVTHGQTGTESVYCNFRNKEIMFHVSTKLPYTEGDAQQLQ 381

  Fly   966 RKRHIGNDIVCVVFLEADNTRFSPACIKSHFLHTFILVRVSARIKHKPTRYEVSVVTRDEVGAYK 1030
            ||||||||||.||| :.:||.|.|..|.|:|||.:::|:........|. |:|||..||:|..:.
  Rat   382 RKRHIGNDIVAVVF-QDENTPFVPDMIASNFLHAYVVVQAEGGGPDGPL-YKVSVTARDDVPFFG 444

  Fly  1031 PYLWEQSVFEKGPMFREWLLTKIVNGERASYSAPKFARMQERTRSQMLEDLVMNLSNHAET 1091
            |.|.:.:||.|||.|:|:||||::|.|.|.|.|.|||:::||||:.:||.|...|..|:::
  Rat   445 PPLPDPAVFRKGPEFQEFLLTKLINAEYACYKAEKFAKLEERTRAALLETLYEELHIHSQS 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rshNP_001285176.1 PHA03309 <207..539 CDD:165564 12/74 (16%)
LIM <583..623 CDD:259829 4/39 (10%)
Rap_GAP 893..1074 CDD:460463 95/180 (53%)
BTB_POZ 1289..>1344 CDD:453885
BTB <1467..1526 CDD:197585
BACK 1531..1603 CDD:475122
Rap1gapXP_063143847.1 None
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.