DRSC/TRiP Functional Genomics Resources

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Protein Alignment rad and hgap-1

DIOPT Version :9

Sequence 1:NP_001285176.1 Gene:rad / 32253 FlyBaseID:FBgn0265597 Length:1799 Species:Drosophila melanogaster
Sequence 2:NP_001368371.1 Gene:hgap-1 / 171663 WormBaseID:WBGene00021209 Length:1306 Species:Caenorhabditis elegans


Alignment Length:480 Identity:117/480 - (24%)
Similarity:165/480 - (34%) Gaps:166/480 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   703 IWDESDSEHEDIRAGSAS-DAYLEREC-----------------SDLYEDDED---SEATPSPRK 746
            |||.  ..|||:|..:.: ..:|.:|.                 .|.::|..|   |..:|||  
 Worm   954 IWDL--DTHEDVRKPATNVTNWLRKEALKGKRPGRESQGILGAMDDPFDDLPDYPPSRGSPSP-- 1014

  Fly   747 KTTIEEQWDQQGAFELIS-VEQETYEKYFYGTEHWNYFTSDEDLGPVILSIKQETLNGRDQFRIL 810
                     ..||.:..| :|....:....||                                 
 Worm  1015 ---------VDGAAQFTSMIETSRRQPQPLGT--------------------------------- 1037

  Fly   811 VRAGSYTVHGLIPASCVFADRYNREEVVRSLG-----KEVNLNPPLTLGQLPDTPEELLKLDQVF 870
                |...|..:||....|.......:..|||     .:|:.|          .|.:|..|||..
 Worm  1038 ----SSAAHDHLPAFTPNAKLLEWRSLSASLGFVPLVSQVHAN----------FPRDLKHLDQTS 1088

  Fly   871 IKSELKVGVIFVKEDQYTEEQILDNN--ENSPLFDEFLTLLGDRVRL-RGFDKYKGGLDTVHDLT 932
            .:...||.||:|.|.|.....||.|.  ..|..||.|.:.||..|:: ||.|.|.||| .|....
 Worm  1089 SREVHKVAVIYVGESQEDRASILSNTTASASAQFDSFTSELGWEVKVGRGHDGYTGGL-PVETRA 1152

  Fly   933 GLFSVYTNWRNIEIMFHVSTLLPYEKHDPQKLQRKRHIGNDIVCVVFLEADNTR--FSPACIKSH 995
            ..|:.    ...|::|||||:|   ..|.|  |:.:|||||.|.||:.|  |||  ::...|.:.
 Worm  1153 PYFAD----AEAEVIFHVSTML---NGDVQ--QKWKHIGNDEVHVVWTE--NTRKVYTRETIATK 1206

  Fly   996 FLHTFILVRVSARIKHKPTRYEVSVVTRDEVGAYKPYLWEQSVFEKGPMFREWLLTKIVNGERAS 1060
            |....|::.   ::..|..|..|...               |..|.||:|...|:|         
 Worm  1207 FCDVLIVLE---QVGDKMVRVRVDTA---------------SALEFGPLFDGALVT--------- 1244

  Fly  1061 YSAPKFARMQERTRSQMLEDLVMNLSNHAETGQIPKPYRRGSWRPIGEDEYIKMLHARVLDNNTH 1125
                    |.|  .||::...|:|.|         :.||           ..::.|:|.|   .|
 Worm  1245 --------MSE--LSQLVRLTVINAS---------RAYR-----------LARVEHSRPL---RH 1276

  Fly  1126 HEQQ--QQLLLQQQHMQHTQHMQHL 1148
            .|:.  .:.|...:.|...|.:.||
 Worm  1277 REEVFCNEALAHMKPMPLAQSINHL 1301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
radNP_001285176.1 LIM <583..623 CDD:259829
Rap_GAP 893..1074 CDD:280332 55/185 (30%)
BTB <1464..1523 CDD:295341
BTB <1467..1526 CDD:197585
BACK 1544..1646 CDD:197943
hgap-1NP_001368371.1 Rap_GAP 1111..1266 CDD:396632 62/223 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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