DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rsh and rap1gap2

DIOPT Version :10

Sequence 1:NP_001285176.1 Gene:rsh / 32253 FlyBaseID:FBgn0265597 Length:1799 Species:Drosophila melanogaster
Sequence 2:XP_017946981.1 Gene:rap1gap2 / 100495015 XenbaseID:XB-GENE-6050621 Length:734 Species:Xenopus tropicalis


Alignment Length:639 Identity:189/639 - (29%)
Similarity:306/639 - (47%) Gaps:128/639 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   584 DNNHYHEECLRCNSCGLNLTGPNQKRARRFKNQILCDLHFADVAL--------------MECSDF 634
            |..|..:..:|.....:.|...::|:.|..:.|.|.:.  ::|.|              |:.::|
 Frog     6 DRMHSKKAGIRAAVVLIGLLHKSRKQNRERRKQELSNT--SEVTLPERPASPPATAPPTMKSAEF 68

  Fly   635 MQQLRSFKPQSLGCAVARRKSSTTLIFPLPPQACSDEFCEE---YPHNLMPT-PGYWIECSRQKI 695
            .:.|...:...|....:..:.:.....|.|   ..:|..|:   ||..::|. .|||||      
 Frog    69 FEMLEKMQVPKLEEQKSGSQKNKEDYIPYP---SIEEILEKDMPYPLIILPQFGGYWIE------ 124

  Fly   696 TMPTPHTIWDESDSEHEDIRAGSASDAYLERECSDLYEDDEDSEATPSPRKKTTIEEQWDQQGAF 760
                          :.|::...::||:.:   |     |||:...:||     |...:.:.:|: 
 Frog   125 --------------DPENVSTPTSSDSSI---C-----DDEEEPISPS-----TYGYKLEYKGS- 161

  Fly   761 ELISVEQETYEKYFYGTEHWNYFTSDEDLGPVILSIKQETLNGRDQFRILVRAGSYTVHGLIPAS 825
                  ...|.|:|.|.:|.|::.:...||.:|||:|.|..:|.:..||::|:.:.|:|..||.|
 Frog   162 ------ARAYRKHFMGKDHLNFYCTASSLGNLILSVKCEESDGIEYLRIILRSKAKTLHERIPLS 220

  Fly   826 CVFADRYNREEVVRSLGKE---VNLNPPLTLGQLPDTPEELLKLDQVFIKSELKVGVIFVKEDQY 887
             .|:...:..::.::|..:   :..||.|    .|...:.::..|:..|.:..|.|||:.|..|.
 Frog   221 -GFSKLPSIPQIAKALCDDATGLKFNPVL----YPKASQLIVAYDEHEINNTFKFGVIYQKYKQT 280

  Fly   888 TEEQILDNNENSPLFDEFLTLLGDRVRLRGFDKYKGGLDTVHDLTGLFSVYTNWRNIEIMFHVST 952
            :||::..|:|.||.|.||:.||||.|.|:.|..::||||..|..||..|:||.:|..||||||||
 Frog   281 SEEELFGNSEESPAFKEFMDLLGDAVLLQDFKGFRGGLDVAHGQTGTESIYTVFREKEIMFHVST 345

  Fly   953 LLPYEKHDPQKLQRKRHIGNDIVCVVFLEADNTRFSPACIKSHFLHTFILVRVSARIKHKP---- 1013
            .||:.:.|.|:||||||||||||.::|.| :||.|.|..|.|:|||.:|:|:|     ..|    
 Frog   346 KLPFTEGDTQQLQRKRHIGNDIVAIIFQE-ENTPFVPDMIASNFLHAYIVVQV-----ENPEADI 404

  Fly  1014 TRYEVSVVTRDEVGAYKPYLWEQSVFEKGPMFREWLLTKIVNGERASYSAPKFARMQERTRSQML 1078
            |.|:|||..|::|.::.|.|....||.|...|||:||||::|.|.|...:.|||::::|||:.:|
 Frog   405 TMYKVSVTAREDVPSFGPPLPNPPVFHKNSEFREFLLTKLINAEHACCKSDKFAKLEDRTRAALL 469

  Fly  1079 EDLVMNLSNHAET--GQIPKPYRRGSWRPIGEDEYIKMLHARVLDNNTHH---EQQQQLLLQQQH 1138
            ::|..:|..|.:.  |..|:           ||:         |:|..|.   |..::.:..:.|
 Frog   470 DNLHDDLHVHTQAMLGLGPE-----------EDK---------LENGAHGGFLESFKRAIRVRSH 514

  Fly  1139 MQHT------QHMQHLPSHNICCYCNNNATELHTAGAIHNNNDNNNTTTTTTFT 1186
            ...|      :|.....|.::            :.|.:|.:.:    .|.|||:
 Frog   515 SMETMVGSQKKHQSAGISGSL------------SGGIVHTSAE----ITKTTFS 552

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rshNP_001285176.1 PHA03309 <207..539 CDD:165564
LIM <583..623 CDD:259829 8/38 (21%)
Rap_GAP 893..1074 CDD:460463 90/184 (49%)
BTB_POZ 1289..>1344 CDD:453885
BTB <1467..1526 CDD:197585
BACK 1531..1603 CDD:475122
rap1gap2XP_017946981.1 Rap_GAP 286..465 CDD:460463 90/184 (49%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.