DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hec and crhr1

DIOPT Version :10

Sequence 1:NP_572843.2 Gene:hec / 32246 FlyBaseID:FBgn0030437 Length:486 Species:Drosophila melanogaster
Sequence 2:XP_696346.3 Gene:crhr1 / 567940 ZFINID:ZDB-GENE-081231-1 Length:430 Species:Danio rerio


Alignment Length:384 Identity:123/384 - (32%)
Similarity:191/384 - (49%) Gaps:55/384 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 LMATVVSA--------TMATNQKENRLFCPLNFDGY-LCWPRTPAGTVLSQYCPDFVEG--FNRK 153
            |::|.::|        |.:.......|||..:.||. .||||:.||.|:|:.||:...|  :|..
Zfish    31 LLSTNLTARTLILWNQTSSPTTNSTGLFCNTSIDGIGTCWPRSSAGEVVSRPCPESFLGVRYNTT 95

  Fly   154 FLAHKTCLENGSWYRHPVSNQTWSNYTNCVDYEDLEFRQ--------FINELYVKGYALSLLALL 210
            ...::.||.||:|.:.       .||:.|.:..:.|.:.        .||.|   |:.:||.|||
Zfish    96 NNVYRECLANGTWAKK-------GNYSQCQEILNEEKKSKLHYHIAVIINYL---GHCISLGALL 150

  Fly   211 ISIIIFLGFKSLRCTRIRIHVHLFASLACTCVAWILWYRLVVE---RSETIAENPLWCIGLHLVV 272
            ::.|:|:..:|:||.|..||.:|..:.......|     .||:   ..|....|.:||..:....
Zfish   151 VAFILFMRLRSIRCLRNIIHWNLITAFILRNATW-----FVVQLTMNPEVHESNVIWCRLVTAAY 210

  Fly   273 HYFMLVNYFWMFCEGLHLHLVLVVVFVKDTIVMRWFIVISWFSPIPIAIVYGLARHFSSPDNKHC 337
            :||.:.|:||||.||.:||..:|:.:..|.:....||.|.|..|.||.:.:.:.:.:.  ||:.|
Zfish   211 NYFHVTNFFWMFGEGCYLHTAIVLTYSTDKLRKWMFICIGWCIPFPIIVAWAIGKLYY--DNEKC 273

  Fly   338 WI-------TDSLYLWIFSVPITLSLLASFIFLINVLRVIVRKLHPQSAQPAPLAIRKAVRATII 395
            |.       ||    :|:..|:.|.||.:||||.|::|:::.||. .|.....:..||||:||::
Zfish   274 WFGKRAGIYTD----YIYQGPMILVLLINFIFLFNIVRILMTKLR-ASTTSETIQYRKAVKATLV 333

  Fly   396 LVPLFGLQHFLLPYRP--DAGTQLDHFYQMLSVVLVSLQGFVVSFLFCFANHDVTFAIR 452
            |:||.|:.:.|....|  |..:|:...|  .:..|.|.|||.||..:||.|.:|..|:|
Zfish   334 LLPLLGITYMLFFVNPGEDEISQIVFIY--FNSFLESFQGFFVSVFYCFLNSEVRSAVR 390

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hecNP_572843.2 HRM 118..183 CDD:397086 24/67 (36%)
7tmB1_NPR_B4_insect-like 191..457 CDD:320388 93/282 (33%)
TM helix 1 193..218 CDD:320388 11/24 (46%)
TM helix 2 227..249 CDD:320388 4/21 (19%)
TM helix 3 266..293 CDD:320388 11/26 (42%)
TM helix 4 305..325 CDD:320388 7/19 (37%)
TM helix 5 341..370 CDD:320388 12/28 (43%)
TM helix 6 385..412 CDD:320388 12/28 (43%)
TM helix 7 419..444 CDD:320388 10/24 (42%)
crhr1XP_696346.3 HormR 55..126 CDD:214468 26/77 (34%)
7tmB1_CRF-R1 131..395 CDD:320561 93/277 (34%)
TM helix 1 133..158 CDD:320561 11/27 (41%)
TM helix 2 167..189 CDD:320561 6/26 (23%)
TM helix 3 204..230 CDD:320561 10/25 (40%)
TM helix 4 243..263 CDD:320561 7/19 (37%)
TM helix 5 280..309 CDD:320561 13/32 (41%)
TM helix 6 323..350 CDD:320561 11/26 (42%)
TM helix 7 357..382 CDD:320561 10/26 (38%)

Return to query results.
Submit another query.