DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hec and Ghrhr

DIOPT Version :9

Sequence 1:NP_001285174.1 Gene:hec / 32246 FlyBaseID:FBgn0030437 Length:486 Species:Drosophila melanogaster
Sequence 2:XP_036021736.1 Gene:Ghrhr / 14602 MGIID:95710 Length:444 Species:Mus musculus


Alignment Length:302 Identity:78/302 - (25%)
Similarity:126/302 - (41%) Gaps:40/302 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 DEELAEKEELMATVVSATMATNQKENRLFCPLNFDGYLCWPRTPAGTVLSQYCPDFVEGFNRKF- 154
            |:|||        .:.|...||  ...|.||..:||.||||.|.:|..:|..||:|...|.... 
Mouse    36 DDELA--------CLQAAEGTN--NTSLGCPGTWDGLLCWPPTGSGQWVSLPCPEFFSHFGSDTG 90

  Fly   155 LAHKTCLENGSWYRHPVSNQTWSN----Y-TNC-VDYE----DLEFRQFINELYVKGYALSLLAL 209
            ...:.|...|           |||    | ..| |..|    :..:...:..:|..|:::|::||
Mouse    91 FVKRDCTITG-----------WSNPFPPYPVACPVPLELLTKEKSYFSTVKIIYTTGHSISIVAL 144

  Fly   210 LISIIIFLGFKSLRCTRIRIHVHLFASLACTCVAWILWYRLVVERSET--IAENPLWCIGLHLVV 272
            .::|.|.:..:.|.|.|..||..|||:......|..|....:.:...|  .:.:.:.|.....:.
Mouse   145 CVAIAILVALRRLHCPRNYIHTQLFATFILKASAVFLKDAAIFQGDSTDHCSMSTVLCKVSVAIS 209

  Fly   273 HYFMLVNYFWMFCEGLHLHLVLVVVFVKDTIVMRWFIVISWFSPIPIAIVY-GLARHFSSPDNKH 336
            |...:.|:.|:..|.::|..:|.....:......|.::..|..|:.....: |....|   ::..
Mouse   210 HLATMTNFSWLLAEAVYLSCLLASTSPRSKPAFWWLVLAGWGLPVLCTGTWVGCKLAF---EDTE 271

  Fly   337 CWITD--SLYLWIFSVPITLSLLASFIFLINVLRVIVRKLHP 376
            ||..|  |...||...||.||:..:|...:|::.:::|||.|
Mouse   272 CWDLDNSSPCWWIIKGPIVLSVGVNFGLFLNIICILLRKLEP 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hecNP_001285174.1 HRM 118..185 CDD:280888 24/73 (33%)
7tm_4 216..436 CDD:304433 39/166 (23%)
GhrhrXP_036021736.1 HRM 53..112 CDD:397086 22/69 (32%)
7tm_GPCRs 126..>325 CDD:421689 46/191 (24%)
TM helix 1 128..153 CDD:410628 7/24 (29%)
TM helix 2 162..184 CDD:410628 7/21 (33%)
TM helix 3 203..230 CDD:410628 5/26 (19%)
TM helix 4 242..262 CDD:410628 3/19 (16%)
TM helix 5 278..307 CDD:410628 9/28 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4564
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X66
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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