DRSC/TRiP Functional Genomics Resources

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Protein Alignment fne and GBP2

DIOPT Version :10

Sequence 1:NP_001401058.1 Gene:fne / 32245 FlyBaseID:FBgn0086675 Length:371 Species:Drosophila melanogaster
Sequence 2:NP_009916.1 Gene:GBP2 / 850346 SGDID:S000000517 Length:427 Species:Saccharomyces cerevisiae


Alignment Length:362 Identity:80/362 - (22%)
Similarity:136/362 - (37%) Gaps:68/362 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 DGSNDESRTNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGNLVLPASLTALNPALQQG 82
            |.:......::.|..|....|.|:::.||.::||:....::..|                    |
Yeast   114 DATKRNFENSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK--------------------G 158

  Fly    83 QSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSESIK-------------GANLYV 134
            ...|.|.|.:.:.|..:.|::..:|....::.:.|....|..|:.|             |..:::
Yeast   159 HHRGMGTVEFTKNESVQDAISKFDGALFMDRKLMVRQDNPPPEAAKEFSKKATREEIDNGFEVFI 223

  Fly   135 SGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKTPKG- 198
            ..||.:::...|:.||...|.::.:.:..| .:|.|:|.|.:.:...:|..|||...||...:| 
Yeast   224 INLPYSMNWQSLKDMFKECGHVLRADVELD-FNGFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGR 287

  Fly   199 YAEPITVKFANNPSNSAKAQIAPPLTAYLTPQAAAATRRLAGALPSAGRISIGKSPMLAINKGLQ 263
            ..|....:|....:|....|....|         ..||              |..|      ||.
Yeast   288 VLEVREGRFNKRKNNDRYNQRREDL---------EDTR--------------GTEP------GLA 323

  Fly   264 RYSPLAGDLLANSILPGNAMTGSGWCIFVY--NLAPETEENVLWQLFGPFGAVQSVKVIRDLQTS 326
            :.:.:..|..|.....|....|...| |:|  ||...|..:.|:.||||.|.:.:.: ::..:..
Yeast   324 QDAAVHIDETAAKFTEGVNPGGDRNC-FIYCSNLPFSTARSDLFDLFGPIGKINNAE-LKPQENG 386

  Fly   327 KCKGFGFVTMTNYDEAVVAIQSLNGYTLGNRVLQVSF 363
            :..|...|...|..:|...||.||.|..|...||:|:
Yeast   387 QPTGVAVVEYENLVDADFCIQKLNNYNYGGCSLQISY 423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fneNP_001401058.1 ELAV_HUD_SF 23..369 CDD:273741 79/357 (22%)
GBP2NP_009916.1 RRM1_HRB1_GBP2 121..197 CDD:410184 17/95 (18%)
RRM2_HRB1_GBP2 218..292 CDD:410185 20/74 (27%)
RRM3_HRB1_GBP2 347..425 CDD:410186 25/79 (32%)

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