Protein Alignment fne and ssx

DIOPT Version :9

• Sequence 1: NP_001096965.1
• Gene: fne / 32245
• FlyBaseID: FBgn0086675
• Length: 356
• Species: Drosophila melanogaster
• Sequence 2: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Alignment Length: 240
• Identity: 87/240 - (36%)
• Similarity: 125/240 - (52%)
• Gaps: 48/240 - (20%)

  Fly     9 KNGSANGSVDG---SNDE---------------------------SRTNLIVNYLPQTMTQEEMR 43
            :||......||   |.||                           |.||||:|||||.||..|:.
  Fly    46 ENGDGGNGGDGQEHSGDEEQHHSQDNEGNDNSAGQQQQMQQVDRTSATNLIINYLPQDMTDRELY 110

  Fly    44 SLFSSIGELESCKLVRDKVSGNLVLPASLTALNPALQQGQSLGYGFVNYVRAEDAEKAVNTLNGL 108
            :|||..|.:.:||::||                  .:.|.|.|||||:|....|:|.|:..|||.
  Fly   111 NLFSGCGPINTCKIMRD------------------FKTGYSFGYGFVDYKTESDSEDAIQKLNGF 157

  Fly   109 RLQNKVIKVSYARPSSESIKGANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGV 173
            .::||.:|||||||..:|||..||||..|.:|::...|:.:|:.:|.|:...||.|.::|..:||
  Fly   158 YVRNKRLKVSYARPGGQSIKDTNLYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGRPRGV 222

  Fly   174 GFIRFDQRNEAERAIQELNGKTPKGYAEPITVKFANNPSNSAKAQ 218
            .|:|:::|.||:.||:.||...|:|.::||.|:.|.....:..||
  Fly   223 AFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAKAAQ 267

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
fne	NP_001096965.1	ELAV_HUD_SF	23..354	CDD:273741	81/223 (36%)
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	43/97 (44%)
		RRM_SF	179..257	CDD:302621	30/77 (39%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45439626
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000313
OrthoInspector	1	1.000	-	-		mtm1072
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	4	3.840