Protein Alignment fne and elavl1a

DIOPT Version :9

• Sequence 1: NP_001096965.1
• Gene: fne / 32245
• FlyBaseID: FBgn0086675
• Length: 356
• Species: Drosophila melanogaster
• Sequence 2: XP_005171324.1
• Gene: elavl1a / 30736
• ZFINID: ZDB-GENE-990415-245
• Length: 340
• Species: Danio rerio
• Alignment Length: 348
• Identity: 195/348 - (56%)
• Similarity: 251/348 - (72%)
• Gaps: 34/348 - (9%)

  Fly    13 ANGSVDGSNDE---SRTNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGNLVLPASLTA 74
            :||..|...||   |:||||||||||.|:|:|:|||||||||:||.||:||||:|:
Zfish    18 SNGYEDHMADELIDSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGH--------- 73

  Fly    75 LNPALQQGQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPK 139
                     |||||||||:...|||:|::||||||||:|.||||||||||:|||.||||:|||||
Zfish    74 ---------SLGYGFVNYLNPNDAERAISTLNGLRLQSKTIKVSYARPSSDSIKDANLYISGLPK 129

  Fly   140 NLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKTPKGYAEPIT 204
            .::|.|:|.||..:|:||.||:|.|..||||:||.|||||:|.|||.||::|||:.|.|.||.:|
Zfish   130 TMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQKPPGAAEQMT 194

  Fly   205 VKFANNPSNSAKAQIAPPLTAYLTPQAAAATRRLAGAL-PSAGRIRYSPLAGDLLANSI---LPG 265
            ||||.:|:.....|:.|.:       ....:||..|.: ..|.|.|:||::.|.::...   :||
Zfish   195 VKFAASPNQVKNTQVIPQV-------YHQQSRRFGGPVHHQAQRFRFSPMSVDHMSGMSGVNVPG 252

  Fly   266 NAMTGSGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVA 330
            |  :.||||||:|||..:.:|.:|||:|||||||.:||||||..|:|||||||||||:|:||.:|
Zfish   253 N--SSSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMA 315

  Fly   331 IQSLNGYTLGNRVLQVSFKTNKT 353
            |.|||||.||:::|||||||:|:
Zfish   316 IASLNGYRLGDKILQVSFKTSKS 338

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
fne	NP_001096965.1	ELAV_HUD_SF	23..354	CDD:273741	191/338 (57%)
elavl1a	XP_005171324.1	ELAV_HUD_SF	31..340	CDD:273741	190/335 (57%)
		RRM1_Hu	33..110	CDD:241094	57/94 (61%)
		RRM2_HuR	120..203	CDD:241217	51/82 (62%)
		RRM3_HuR	257..340	CDD:241097	57/82 (70%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	123	1.000	Domainoid score	I5514
eggNOG	1	0.900	-	-		E1_KOG0145
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	414	1.000	Inparanoid score	I1806
OMA	1	1.010	-	-		QHG55893
OrthoDB	1	1.010	-	-		D425303at33208
OrthoFinder	1	1.000	-	-		FOG0000313
OrthoInspector	1	1.000	-	-		mtm6531
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR10352
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X326
SwiftOrtho	1	1.000	-	-
TreeFam	1	0.960	-	-
ZFIN	0	0.000	Not matched by this tool.
	13	12.940