Protein Alignment fne and usp102

DIOPT Version :10

• Sequence 1: NP_001401058.1
• Gene: fne / 32245
• FlyBaseID: FBgn0086675
• Length: 371
• Species: Drosophila melanogaster
• Sequence 2: NP_596424.1
• Gene: usp102 / 2540865
• PomBaseID: SPBC4B4.07C
• Length: 249
• Species: Schizosaccharomyces pombe
• Alignment Length: 259
• Identity: 60/259 - (23%)
• Similarity: 103/259 - (39%)
• Gaps: 69/259 - (26%)

  Fly   132 LYVSGLPKNLS----QPDLEGMFASFGKII------TSRILCDNISGLSKGVGFIRFDQRNEAER 186
            ||:..:.:.:.    :..||.:|.|:||:|      |.|:         :|..|:.||....|.|
pombe    28 LYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTLRM---------RGQAFVVFDNLENASR 83

  Fly   187 AIQELNGKTPKGYAEPITVKFANNPSNSAKAQIAP-----------------PLTAYLTPQAAAA 234
            |:::|.|...  |.:|:.::::.:.|:....:.:|                 ..|:.|.|.|...
pombe    84 ALKDLQGYPL--YGKPMMIQYSKSKSDIIVQRESPEEIETRKKDRKNRREMLKRTSALQPAAPKP 146

  Fly   235 TRRLAGALPSAGRISIGKSPMLAINKGLQRYSPLAGDLLANSILPGNAMTGSGWCIFVYNLAPET 299
            |.               |.|:...|.|.:|.|.:..||     ||.|.:      :.:.|:..|.
pombe   147 TH---------------KKPVPKRNVGAERKSTINEDL-----LPPNKV------LLLQNIPQEV 185

  Fly   300 EENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSLNGYTLGNRVLQVSF 363
            ..:||.|:|..|...|.|:::...     :|..||...:..||.||.....|.:|....::|:|
pombe   186 NADVLTQIFEAFSGFQEVRMVPGR-----RGIAFVEYDSDREATVAKNGTTGMSLSGNQIKVTF 244

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
fne	NP_001401058.1	ELAV_HUD_SF	23..369	CDD:273741	60/259 (23%)
usp102	NP_596424.1	RRM1_U1A_like	27..104	CDD:409692	22/86 (26%)
		RRM2_U1A_like	172..243	CDD:409693	19/81 (23%)