DRSC/TRiP Functional Genomics Resources

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Protein Alignment HOXC8 and ftz

DIOPT Version :9

Sequence 1:NP_073149.1 Gene:HOXC8 / 3224 HGNCID:5129 Length:242 Species:Homo sapiens
Sequence 2:NP_477498.1 Gene:ftz / 40834 FlyBaseID:FBgn0001077 Length:410 Species:Drosophila melanogaster


Alignment Length:102 Identity:48/102 - (47%)
Similarity:58/102 - (56%) Gaps:32/102 - (31%)


- Green bases have known domain annotations that are detailed below.


Human   113 DCKSSANTNSSEGQGHLNQNSSPSLMFPWMRPHAPGRRSGRQTYSRYQTLELEKEFLFNPYLTRK 177
            |||.|..|                                ||||:|||||||||||.||.|:||:
  Fly   250 DCKDSKRT--------------------------------RQTYTRYQTLELEKEFHFNRYITRR 282

Human   178 RRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKLP 214
            |||::::||.|:|||:||||||||||.||:...|..|
  Fly   283 RRIDIANALSLSERQIKIWFQNRRMKSKKDRTLDSSP 319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HOXC8NP_073149.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 114..154 4/39 (10%)
Antp-type hexapeptide 138..143 0/4 (0%)
Homeobox 153..205 CDD:306543 39/51 (76%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 206..242 3/9 (33%)
ftzNP_477498.1 FTZ 1..248 CDD:281812
Homeobox 257..310 CDD:278475 40/84 (48%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.810

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