DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde9 and Pde2a

DIOPT Version :9

Sequence 1:NP_727644.3 Gene:Pde9 / 32233 FlyBaseID:FBgn0259171 Length:1623 Species:Drosophila melanogaster
Sequence 2:NP_001137319.1 Gene:Pde2a / 81743 RGDID:620965 Length:935 Species:Rattus norvegicus


Alignment Length:898 Identity:188/898 - (20%)
Similarity:323/898 - (35%) Gaps:251/898 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 AVLLQRSSNNLQQQQQQQQQQQQHLQLQLQQADERLLRKIGYIASRVRCLSKYYGDFRLVNPYSA 208
            ||:|.........::|..|..::|..:.||               ||:.|               
  Rat   158 AVILVHCGQLSDSEEQSLQVVEKHALVALQ---------------RVQAL--------------- 192

  Fly   209 RRQRRQLQEILLRHSIFDPGKE---------HQRAIVLAAATAAIAGPLAAIDCVCGSSSISLEA 264
              |:|:.:.:  :::..||.::         |.|.|:      .:.|.|..:|    ::|:.|:.
  Rat   193 --QQRRPEAV--QNTSADPSEDQKDEKGYTAHDRKIL------QLCGELYDLD----ATSLQLKV 243

  Fly   265 VSSRSRSSELEDDHHEQDQVQEEQEQ-------EQHQGDTEDNEEEQEHPSEKPERTDIEEEPPP 322
            :  |....|.:..|.....|.|:..|       |:..|      ||...|........:.|:   
  Rat   244 L--RYLQQETQATHCCLLLVSEDNLQLSCKVIGEKVLG------EEVSFPLTMGRLGQVVED--- 297

  Fly   323 AIAVTTTTTATVRRKSSSSSTISGTATVSG-------SVSVSASASQSF----CSNNINLLEELL 376
                    ...::.|..:|..:.....:.|       .|.|.:.|:...    |:.|     :|.
  Rat   298 --------KQCIQLKDLTSDDVQQLQNMLGCELRAMLCVPVISRATDQVVALACAFN-----KLG 349

  Fly   377 IQFYEEQDHRSNLTVIRHHHHQ---------QHQQHQQ--------------------------Q 406
            ..|:.::|.|:    |:|..|.         ..|:.|:                          |
  Rat   350 GDFFTDEDERA----IQHCFHYTGTVLTSTLAFQKEQKLKCECQALLQVAKNLFTHLDDVSVLLQ 410

  Fly   407 QRITNNNNNNNN--CN-SIQNNNNMSNPAATAAATATPSVE--QPATSGTTNIHLQPT----SLP 462
            :.||...|.:|.  |: .:.:.|.:.............|.|  .||..|... |:..|    ::|
  Rat   411 EIITEARNLSNAEICSVFLLDQNELVAKVFDGGVVDDESYEIRIPADQGIAG-HVATTGQILNIP 474

  Fly   463 DGSDNPRRRRASDCSAVQAALQNQLHCITLKNNNCGKAMPFHRGSCGAAGEHLLAANSIANRATI 527
            |...:|...|..|.|.  ......:.|..:||.|                :.::....:.|:   
  Rat   475 DAYAHPLFYRGVDDST--GFRTRNILCFPIKNEN----------------QEVIGVAELVNK--- 518

  Fly   528 ILSKSCSNVDGDATATAATALSSTVGGGIGGIGGSIKMRASATDIETNALNGARDAIVASNNGNN 592
            |.....|..|.|    .|||.|...|..|            |..:....:|.|            
  Rat   519 INGPWFSKFDED----LATAFSIYCGISI------------AHSLLYKKVNEA------------ 555

  Fly   593 GNNGNNGNNEYSILQLNNTIIQCHF--NDDDFRALVKDLKRKVEYTERMNWLCLSKRPLGPPHRK 655
                     :|. ..|.|.::..|.  :||::..|:.|                ..:|:.     
  Rat   556 ---------QYR-SHLANEMMMYHMKVSDDEYTKLLHD----------------GIQPVA----- 589

  Fly   656 SSLPKHQEVKRRFLEICDTTFSEEVRAALRLPAFDSYEWSDADVIHLMQTMFVELGFIEKFSIPV 720
                           ..|:.|:........||        :.|....:.:|..::.||..:.|..
  Rat   590 ---------------AIDSNFANFTYTPRSLP--------EDDTSMAILSMLQDMNFINNYKIDC 631

  Fly   721 DTLREWLYEVYKHYNEVPFHNFRHCFCVAQMMYAITRQANLLSRLGDLECLILLVSCICHDLDHP 785
            .||..:...|.|.|.:.|:||:.|.|.|:...|.:.:...|.:.|.|:|...|.:||:||||||.
  Rat   632 PTLARFCLMVKKGYRDPPYHNWMHAFSVSHFCYLLYKNLELSNYLEDIEIFALFISCMCHDLDHR 696

  Fly   786 GYNNIYQINARTELALRY-NDISPLENHHCSIAFRLLEHPECNIFKNFSRDTFNNIREGIIRCIL 849
            |.||.:|:.:::.||..| ::.|.:|.||.:.|..:|....||||.:|||..:..:.:.:...||
  Rat   697 GTNNSFQVASKSVLAALYSSEGSVMERHHFAQAIAILNTHGCNIFDHFSRKDYQRMLDLMRDIIL 761

  Fly   850 ATDMARHNEILTQFMEITPI-FDYSNRAHINLLCMILIKVADISNEARPMDVAEPWLDRLLQEFF 913
            |||:|.|..|.....::..: :|.:|:.|..||..:|:...|:|::.:.........:.:.:|||
  Rat   762 ATDLAHHLRIFKDLQKMAEVGYDRNNKQHHRLLLCLLMTSCDLSDQTKGWKTTRKIAELIYKEFF 826

  Fly   914 AQSAAEKSEGLPVTPFMDPDKVSKPGSQVRFIGLVLLPLFEALGELVPELTEL 966
            :|...||:.|......||.:|...|..|:.|:..:.:|:::.|.:|.|:..||
  Rat   827 SQGDLEKAMGNRPMEMMDREKAYIPELQISFMEHIAMPIYKLLQDLFPKAAEL 879

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde9NP_727644.3 PDEase_I 739..967 CDD:278654 74/230 (32%)
Pde2aNP_001137319.1 GAF 235..382 CDD:214500 31/178 (17%)
GAF 404..553 CDD:214500 36/186 (19%)
PDEase_I 650..883 CDD:278654 74/230 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3689
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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