DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde9 and Pde1c

DIOPT Version :9

Sequence 1:NP_727644.3 Gene:Pde9 / 32233 FlyBaseID:FBgn0259171 Length:1623 Species:Drosophila melanogaster
Sequence 2:NP_112340.1 Gene:Pde1c / 81742 RGDID:68332 Length:768 Species:Rattus norvegicus


Alignment Length:833 Identity:191/833 - (22%)
Similarity:315/833 - (37%) Gaps:230/833 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   534 SNVDGDATATAATALSSTVGGG------IGGIGGSIKMRASATDIETNALNGARDAIVASNNGNN 592
            :|..||..|......|.:....      |.|:.|::|.:...|.::...   ..:.|:|      
  Rat    30 ANEAGDKNARPLARFSRSKSQNCLWNSLIDGLTGNVKEKPRPTIVQDTR---PPEEILA------ 85

  Fly   593 GNNGNNGNNEYSILQLNNTIIQCHFNDDDFRALVK----------DLKRKVEY------------ 635
                    :|...|.....:::..|.   .|:|||          |||:.:||            
  Rat    86 --------DELPQLDSPEALVKTSFR---LRSLVKQLERGEASVVDLKKNLEYAATVLESVYIDE 139

  Fly   636 TERM--------------------NWLCLS-KRPLGPPHRKS-SLPKHQEV-------------K 665
            |.|:                    :||..: .|.:|...|:| ..|:.:.:             .
  Rat   140 TRRLLDTEDELSDIQSDAVPSEVRDWLASTFTRQMGMMLRRSDEKPRFKSIVHAVQAGIFVERMY 204

  Fly   666 RRFLEICDTTFSEEVRAALR---LPAFDSYEWSDADVIHLMQTMFVEL----GFIEKFSIPVDTL 723
            ||...:...::...|..||:   ..:||.:..::|...|.::.:|.||    ..|.:|.||:..|
  Rat   205 RRTSNMVGLSYPPAVIDALKDVDTWSFDVFSLNEASGDHALKFIFYELLTRYDLISRFKIPISAL 269

  Fly   724 REWL--YEV--YKHYNEVPFHNFRHCFCVAQMMYAITRQANLLSRLGDLECLILLVSCICHDLDH 784
            ..::  .||  .||.|  |:||..|...|.|.::.:..:..:.:.|.:||...::.|...||.:|
  Rat   270 VSFVEALEVGYSKHKN--PYHNLMHAADVTQTVHYLLYKTGVANWLTELEIFAIIFSAAIHDYEH 332

  Fly   785 PGYNNIYQINARTELALRYNDISPLENHHCSIAFRLL-EHPECNIFKNFSRDTFNNIREGIIRCI 848
            .|..|.:.|..|::.|:.|||.|.|||||.|.|:||| |..|.||..|.|:|.:...|..:|..:
  Rat   333 TGTTNNFHIQTRSDPAILYNDRSVLENHHLSAAYRLLQEDEEMNILVNLSKDDWREFRTLVIEMV 397

  Fly   849 LATDMARHNEILTQFMEITPIFDYSNRAHINLLCMILIKVADISNEARPMDVAEPWLDRLLQEFF 913
            :||||:.|   ..|...:.................:::..||||:.|:..|:...|...||:|||
  Rat   398 MATDMSCH---FQQIKAMKTALQQPEAIEKPKALSLMLHTADISHPAKAWDLHHRWTMSLLEEFF 459

  Fly   914 AQSAAEKSEGLPVTPFMDPDKVSKPGSQVRFIGLVLLPLFEALGELVPELTELIIIPVRIALEYY 978
            .|...|...|||.:|..|........|||.||..::.|.|..|    .::||.|:.|:       
  Rat   460 RQGDREAELGLPFSPLCDRKSTMVAQSQVGFIDFIVEPTFTVL----TDMTEKIVSPL------- 513

  Fly   979 RRLNDAQTKTRKSVADSNTSATSD--SNSGTIDSNAAMVSTPGGASDKLSLDKGQGNSQGSGGGG 1041
              :::.          |.|..|..  |:..:|:|:.|..|                         
  Rat   514 --IDET----------SQTGGTGQRRSSLNSINSSDAKRS------------------------- 541

  Fly  1042 GGGGGGGAGGGTGSGCGSNAAGSVSPQMPRSGSGISVKS----------------RRSIPSQKSA 1090
                |..:.|..||...:|   ||.|        :..||                |..:|.::.|
  Rat   542 ----GVKSSGSEGSAPINN---SVIP--------VDYKSFKATWTEVVQINRERWRAKVPKEEKA 591

  Fly  1091 SRTSVDEPGGMASELHDLPEGSESGDSETATEVDVAEKTSKFKVDTEGSSNRSKSSHSTSRKSSR 1155
            .: ..:|...:|:|             |...|::...:..      :|::::::      :|:|.
  Rat   592 KK-EAEEKARLAAE-------------EKQKEMEAKSQAE------QGTTSKAE------KKTSG 630

  Fly  1156 EKRPSMIGELCSSGGGQRIRNSYGNIHG--YHSNRCHFGNNRAVSLDQYSSAGNNRRLSDG---- 1214
            |.:..:.|...|.|...|.:||.|:..|  ..:.....|.|:|...| :|:.||..:.:||    
  Rat   631 ETKGQVNGTRTSKGDNPRGKNSKGDKAGEKQQNGDLKDGKNKADKKD-HSNTGNESKKADGTKKR 694

  Fly  1215 -----LPQVISDSNVFYG------RHNR--SSTETTVAVGNPQDTNANTNHPV 1254
                 .|...|.|.:...      ||.:  :...::.|...|:.|:   :|||
  Rat   695 SHGSPAPSTSSTSRLTLPVIKPPLRHFKRPAYASSSYAPSVPKKTD---DHPV 744

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde9NP_727644.3 PDEase_I 739..967 CDD:278654 75/228 (33%)
Pde1cNP_112340.1 PDEase_I_N 146..202 CDD:285672 7/55 (13%)
PDEase_I 287..515 CDD:278654 77/243 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 513..557 13/94 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 584..719 31/161 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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