DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde9 and Pde8b

DIOPT Version :9

Sequence 1:NP_727644.3 Gene:Pde9 / 32233 FlyBaseID:FBgn0259171 Length:1623 Species:Drosophila melanogaster
Sequence 2:XP_008758892.1 Gene:Pde8b / 309962 RGDID:735041 Length:885 Species:Rattus norvegicus


Alignment Length:918 Identity:190/918 - (20%)
Similarity:327/918 - (35%) Gaps:271/918 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   296 DTEDNEEEQEHPSEKPE--------RTDIEEEPPPAIAVTTTTTATVRRK-----SSSSSTISGT 347
            |..::..:....|:.|.        :||..:..||:.|........|||.     |.||:..||.
  Rat    21 DESNSPRQTSSVSQGPTAPLHGLFVQTDAADAMPPSRAAGPPGAVRVRRSRAELGSGSSTGSSGP 85

  Fly   348 A--TVSG-----SVSVSASASQSFCS-NNINLLE-------------ELLIQFYEEQD------- 384
            |  |..|     ..|..|....|:.| ..::..|             ::|:.|.:|..       
  Rat    86 AATTCRGRRRHCCSSAEAETQTSYTSVKQVSSAEVRIGPMRLTQDPIQVLLIFAKEDSQSDGFWW 150

  Fly   385 ------HRSNLT---------VIRHHHHQQHQQHQQQQRITNNNNNNNNCNSIQNNNNMSNPAAT 434
                  :|.|:.         .:..||......|:|    |.|.:....|.||:..|...:....
  Rat   151 ACDRAGYRCNIARTPESALECFLDKHHEIIVIDHRQ----TRNFDAEAVCRSIRATNPSEHTVIL 211

  Fly   435 AAATATPSVEQPAT------SGTTNIHLQPTSL---------PDGSDNPRRRRASDCSAVQAALQ 484
            |..:......:.|:      :|.....::.:|:         .:..:...:.:...|::|..||.
  Rat   212 AVVSQASDDHEEASVLPLLHAGFNRRFMENSSIIACYNELIQIEHGEVRSQFKLRACNSVFTALD 276

  Fly   485 NQLHC------------ITLKNNNCGKAMPFHRGSCGAAGEHLL-AANSIANRATII-------- 528
               ||            |...|....:.|.:|:|.  ..|:.|. ...|..|||.::        
  Rat   277 ---HCHEAIEITSDDHVIQYVNPAFERMMGYHKGE--LLGKELADLPKSDKNRADLLDTINTCIK 336

  Fly   529 ----------------------------------------LSKSCSNVD------------GDAT 541
                                                    |.|.|...|            ||.:
  Rat   337 KGKEWQGVYYARRKSGDSIQQHVKITPVIGQGGKIRHFVSLKKLCCTTDSSKQIHRIHRDSGDNS 401

  Fly   542 ATAATALS--------------STVGGGIGGIGG----------SIKMRASATDIETNALNGARD 582
            .|...:..              |:.|.....:..          |:.:.|..|.: .|.:|.|::
  Rat   402 QTEPHSFRHKSRRKESIDVKSISSRGSDAPSLQNRRYPSMARIHSMTIEAPITKV-INIINAAQE 465

  Fly   583 AIVASNNGNNGNNGNNGNNEYSILQLNNTII-----------QCHFNDDD------FRALVKDLK 630
                             |:..::.:..:.::           |....|:|      ...|:.|..
  Rat   466 -----------------NSPVTVAEALDRVLEILRTTELYSPQLGTKDEDPHTSDLVGGLMTDGL 513

  Fly   631 RKV---EYTERMNWLCLSKRPLGPPHRKSSLP-KHQEVKRRFLEICDTTFSEEVRAALRLPAFDS 691
            |::   ||....|        :...|...|:| ...:|.....::.|...|.:         |:.
  Rat   514 RRLSGNEYVFTKN--------VHHSHSHLSMPITINDVPPSIAQLLDNEESWD---------FNI 561

  Fly   692 YEWS----DADVIHLMQTMFVELGFIEKFSIPVDTLREWLYEVYKHYNEV-PFHNFRHCFCVAQM 751
            :|..    ...:::|...:|...|..|..:....|||.||..:..:|:.. .:||..|...|...
  Rat   562 FELEAITHKRPLVYLGLKVFSRFGVCEFLNCTETTLRAWLQVIEANYHSSNAYHNSTHAADVLHA 626

  Fly   752 MYAITRQANLLSRLGDLECLILLVSCICHDLDHPGYNNIYQINARTELALRYNDISPLENHHCSI 816
            ......:..:...|..|:.:..|::...||:||||..|.:..||.:|||:.|||.:.||:||.::
  Rat   627 TAFFLGKERVKGSLDQLDEVAALIAATVHDVDHPGRTNSFLCNAGSELAVLYNDTAVLESHHTAL 691

  Fly   817 AFRL-LEHPECNIFKNFSRDTFNNIREGIIRCILATDMARHNEILTQFM---------------- 864
            ||:| ::..:||||||..|:.:..:|:.||..:|||:|.:|.|.:.:|:                
  Rat   692 AFQLTVKDTKCNIFKNIDRNHYRTLRQAIIDMVLATEMTKHFEHVNKFVNSINKPLAAESEGSDC 756

  Fly   865 EITPIFDYSNRAHINLLCMILIKVADISNEARPMDVAEPWLDRLLQEFFAQSAAEKSEGLPVT-P 928
            |..|.........| |:..::||.||::|..||:|:...|..|:.:|:|||:..||.:||||. |
  Rat   757 ECNPTGKNFPENQI-LIKRMMIKCADVANPCRPLDLCIEWAGRISEEYFAQTDEEKRQGLPVVMP 820

  Fly   929 FMDPDKVSKPGSQVRFIGLVLLPLFEA------LGELVPELTELIIIPVRIALEYYRRLNDAQTK 987
            ..|.:..|.|.||:.||...:..:|:|      |..|:..|.:        ..::::.|:|.:.|
  Rat   821 VFDRNTCSIPKSQISFIDYFITDMFDAWDAFAHLPALMQHLAD--------NYKHWKTLDDLKCK 877

  Fly   988 TRKSVADS 995
            :.:..::|
  Rat   878 SLRLPSNS 885

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde9NP_727644.3 PDEase_I 739..967 CDD:278654 83/251 (33%)
Pde8bXP_008758892.1 PDE8 1..47 CDD:285793 3/25 (12%)
PAS_9 279..377 CDD:290162 11/99 (11%)
PAS 284..376 CDD:238075 11/93 (12%)
PDEase_I 614..861 CDD:278654 82/247 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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