DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde9 and Pde1b

DIOPT Version :9

Sequence 1:NP_727644.3 Gene:Pde9 / 32233 FlyBaseID:FBgn0259171 Length:1623 Species:Drosophila melanogaster
Sequence 2:NP_073201.1 Gene:Pde1b / 29691 RGDID:3278 Length:535 Species:Rattus norvegicus


Alignment Length:511 Identity:126/511 - (24%)
Similarity:204/511 - (39%) Gaps:123/511 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   603 YSILQLNNTIIQCHFNDDDFRALVKDLKRKVEYT------------------------------- 636
            |.:.||.|..:.           :::||:.:|||                               
  Rat    40 YMVKQLENGEVN-----------IEELKKNLEYTASLLEAVYIDETRQILDTEDELRELRSDAVP 93

  Fly   637 -ERMNWLC--LSKRPLGPPHRKSSLPKHQEVK-------------RRFLEICDTTFSEEVRAALR 685
             |..:||.  .:::......|....||.:.:.             ||.......|:|..|...|:
  Rat    94 SEVRDWLASTFTQQTRAKGRRAEEKPKFRSIVHAVQAGIFVERMFRRTYTAVGPTYSTAVHNCLK 158

  Fly   686 ---LPAFDSYEWSDADVIHLMQTMFVEL----GFIEKFSIPVDTLREWL------YEVYKHYNEV 737
               :..||.:..:.|...|.::|:..||    ..|.:|.||...|..:|      |..||:    
  Rat   159 NLDVWCFDVFSLNRAADDHALRTIVFELLTRHSLISRFKIPTVFLMSFLEALETGYGKYKN---- 219

  Fly   738 PFHNFRHCFCVAQMMYAITRQANLLSRLGDLECLILLVSCICHDLDHPGYNNIYQINARTELALR 802
            |:||..|...|.|.::....:..::..|.::|.|.::.:...||.:|.|..|.:.|..::|.|:.
  Rat   220 PYHNQIHAADVTQTVHCFLLRTGMVHCLSEIEVLAIIFAAAIHDYEHTGTTNSFHIQTKSECAIL 284

  Fly   803 YNDISPLENHHCSIAFRLLEHPECNIFKNFSRDTFNNIREGIIRCILATDMARHNEILTQFMEIT 867
            |||.|.|||||.|..||:::..|.|||.|.::|.|..:|..:|..:|||||:.|   ..|...:.
  Rat   285 YNDRSVLENHHISSVFRMMQDDEMNIFINLTKDEFVELRALVIEMVLATDMSCH---FQQVKTMK 346

  Fly   868 PIFDYSNRAHINLLCMILIKVADISNEARPMDVAEPWLDRLLQEFFAQSAAEKSEGLPVTPFMDP 932
            .......|...:....:|:..||||:..:...|...|...|::|||.|...|...|||.:|..|.
  Rat   347 TALQQLERIDKSKALSLLLHAADISHPTKQWSVHSRWTKALMEEFFRQGDKEAELGLPFSPLCDR 411

  Fly   933 DKVSKPGSQVRFIGLVLLPLFEALGEL----VPELTELIIIPVRIALEYYRRLNDAQTKTRKS-- 991
            .......||:.||..::.|.|..|.::    |..||:                :|:::|::.|  
  Rat   412 TSTLVAQSQIGFIDFIVEPTFSVLTDVAEKSVQPLTD----------------DDSKSKSQPSFQ 460

  Fly   992 ---------VADSNTSATSDSNSGT--IDSN-------AAMVSTPGGASDKLSLDK 1029
                     |.|.|....|..::.|  |..|       ||     .|.::::|:|:
  Rat   461 WRQPSLDVDVGDPNPDVVSFRSTWTKYIQENKQKWKERAA-----SGITNQMSIDE 511

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde9NP_727644.3 PDEase_I 739..967 CDD:278654 73/231 (32%)
Pde1bNP_073201.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
Calmodulin-binding. /evidence=ECO:0000255 27..47 3/6 (50%)
PDEase_I_N 80..136 CDD:400687 6/55 (11%)
PDEase_I 221..448 CDD:395177 72/229 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 445..474 7/44 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 495..535 5/22 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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