DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pde9 and pde-1

DIOPT Version :9

Sequence 1:NP_727644.3 Gene:Pde9 / 32233 FlyBaseID:FBgn0259171 Length:1623 Species:Drosophila melanogaster
Sequence 2:NP_493343.1 Gene:pde-1 / 173200 WormBaseID:WBGene00011433 Length:664 Species:Caenorhabditis elegans


Alignment Length:668 Identity:165/668 - (24%)
Similarity:268/668 - (40%) Gaps:186/668 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   469 RRRRASDCSAVQAALQNQLHCITLKNNNCGKAMPFHRGSCGAAGEHLLAANSI---------ANR 524
            |.|:.|.|...::|.     |: ||.:. ..|...|    |.:.:.||:...|         ::|
 Worm     3 RARKTSSCGCFRSAF-----CL-LKPST-SSASEEH----GDSDKKLLSVQLITPRDEEEQTSSR 56

  Fly   525 ATIILSKSCSNVDGDATATAATALS---STVGGGIGGIGGSIKMRASATDIETNALNGARDAIVA 586
            :..|.....:.:|....|.||....   ::.|||:.|.|...::          .|:|.:..:..
 Worm    57 SIKIPPLDLNGLDCKKNAVAARRAGRRRTSEGGGVRGKGHFAEV----------VLDGLQRPVSL 111

  Fly   587 SNNGNNGNNGNNGNNE---------------------------YSILQLNNTIIQCHFNDDDFRA 624
            ..|....:|.::...|                           |.:.|||:..:.          
 Worm   112 LRNQKEKSNSDDNCQEKEPTSPSSSRKKSYDNAPALESLEKLRYILHQLNSGQLP---------- 166

  Fly   625 LVKDLKRKVEY------------TERM--------------------NWLC--LSKRPLGPPHRK 655
             ::||||.:||            |.|:                    .||.  .:::..|   :|
 Worm   167 -LEDLKRNIEYAALVLETAYMDETRRICDEDDDLAEVTPETVPDEVREWLAATFTRQNAG---KK 227

  Fly   656 SSLPKHQ----------------------------EVKRRFLEICDTTFS----EEVRA--ALRL 686
            ...||.:                            |:.....|:|..:||    .||..  ||:.
 Worm   228 RDKPKFKSVANAIRTGIFFEKLFRKQQVVQCPIPPEIAELMKEVCTWSFSPFQLNEVSEGHALKY 292

  Fly   687 PAFDSYEWSDADVIHLMQTMFVELGFIEKFSIPVDTLREWL--YEV-YKHYNEVPFHNFRHCFCV 748
            ..|:               :|...||:::|.:|:..|..:|  .|| |..:|. |:||..|...|
 Worm   293 VGFE---------------LFNRYGFMDRFKVPLTALENYLSALEVGYSKHNN-PYHNVVHAADV 341

  Fly   749 AQMMYAITRQANLLSRLGDLECLILLVSCICHDLDHPGYNNIYQINARTELALRYNDISPLENHH 813
            .|..:.:..|..|.:.|||||.|.:|...:.||.:|.|:.|.:.|.::::.|:.|||.|.|||||
 Worm   342 TQSSHFMLSQTGLANSLGDLELLAVLFGALIHDYEHTGHTNNFHIQSQSQFAMLYNDRSVLENHH 406

  Fly   814 CSIAFRLLEHPECNIFKNFSRDTFNNIREGIIRCILATDMARHNEILTQFMEITPIFDY------ 872
            .|..|||::..:.||..:.:||.:..:|..:|..:|||||:.|      ||:|..:...      
 Worm   407 VSSCFRLMKEDDKNILTHLTRDEYKELRNMVIEIVLATDMSTH------FMQIKTMKSMLSLPEG 465

  Fly   873 --SNRAHINLLCMILIKVADISNEARPMDVAEPWLDRLLQEFFAQSAAEKSEGLPVTPFMDPDKV 935
              .|:|    ||:| :...|||:.|:|.::.|.|.:.:|:|||.|...|.|.|||.:|..|...|
 Worm   466 IDKNKA----LCLI-VHACDISHPAKPWNLHERWTEGVLEEFFRQGDLEASMGLPYSPLCDRHTV 525

  Fly   936 SKPGSQVRFIGLVLLPLFEALGELVPELTE-LIIIPVRIALEYYRRLNDAQTKTRKS----VADS 995
            ....||:.||..::.|.....|||:.::.| |:.:|...:| :...::....|:..:    :.|.
 Worm   526 HVADSQIGFIDFIVEPTMVVCGELLVKMVEPLVSLPPTDSL-FPPSVDGGDDKSPSNALSPLPDL 589

  Fly   996 NTSATSDSNSGTIDSNAA 1013
            ..|:||.|:...|..|.|
 Worm   590 RNSSTSPSSIRRIPLNYA 607

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde9NP_727644.3 PDEase_I 739..967 CDD:278654 83/236 (35%)
pde-1NP_493343.1 PDEase_I_N 195..248 CDD:285672 6/55 (11%)
PDEase_I 332..558 CDD:278654 83/236 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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