DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde9 and pde4d

DIOPT Version :9

Sequence 1:NP_727644.3 Gene:Pde9 / 32233 FlyBaseID:FBgn0259171 Length:1623 Species:Drosophila melanogaster
Sequence 2:XP_031749923.1 Gene:pde4d / 100496479 XenbaseID:XB-GENE-1013100 Length:912 Species:Xenopus tropicalis


Alignment Length:911 Identity:199/911 - (21%)
Similarity:332/911 - (36%) Gaps:268/911 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   339 SSSSTISGTATVSGSVSVSASASQSFCSNNINLLEELLIQFYEEQDHRSNLTVIRHHHHQQHQQH 403
            :..|.:|.....|.:.| :.|:..|..:.|:...:.|   :.:||..|.....:  ||||...||
 Frog     3 TEGSKLSALLNSSSNCS-NGSSDSSSSTGNLKAPKHL---WRQEQQQRWQCPAL--HHHQSFVQH 61

  Fly   404 QQ-----------------QQRI----------TNNNNNNNNCNSIQNNNNMSNPA--------- 432
            |:                 ||.|          ..|........|:.    .|.||         
 Frog    62 QEPPAPLHPALPDTPLLLSQQNIYPLLHPLPLAQINPALQPQIYSVL----PSQPAPQILPALQA 122

  Fly   433 -----------ATAAATATPSVE-------QPATSGTTNIHLQPTSLPDGSDNPRRRRASDCSAV 479
                       |.:.:..:|.::       ||..|...|..|||.|.|.....|.       ..:
 Frog   123 HIYPVHQPQSPALSPSQVSPGLQPQIYPDLQPQPSSQINPALQPQSPPQIQAQPH-------PLL 180

  Fly   480 QAALQNQLHCITLKNNNC---------GKAMPFHRG--------SCGAAGEHLLAANSIANRATI 527
            ...||.|||.......:|         ..:...|||        .|.|......|.:: .:|..:
 Frog   181 PFQLQPQLHSQAQPAPHCPPVSSRTRYSNSRVRHRGFSDTERYLHCQAMDRSSYAVDT-GHRPGL 244

  Fly   528 ILSKSC--SNVDG-------DATATAATALSSTVGGGIGGIGGSIKMRA--------------SA 569
            ..|:..  |:..|       :.|.:..:.|......|.|.|     ::|              |.
 Frog   245 KKSRMSWPSSFQGFRRFDVDNGTTSGRSPLDPMTSPGSGLI-----LQANFVHSQRRESFLYRSD 304

  Fly   570 TDIETNALNGARDAIVASN-NGNN----------GNNGNNGNNEYSILQLNNTI-----IQCHFN 618
            :|.|.:..:.:|::.:||: :|::          .:.....||..::..|.:..     ..|:..
 Frog   305 SDYELSPKSMSRNSSIASDIHGDDLIVTPFAQVLASLRTVRNNFAALTNLQDRAPSKRSTMCNQP 369

  Fly   619 DDDFRALVKDLKRKV--EYTERMNWLCLSK-RPLGPPHRKSSLPKHQ-------------EVKR- 666
            ..:...:.::..:|:  |..|.::| ||.: ..|...|..|.:..::             |:.| 
 Frog   370 SINKATIPEEAYQKLAGETLEELDW-CLDQLETLQTRHSVSEMASNKFKRMLNRELTHLSEMSRS 433

  Fly   667 --RFLEICDTTFSEE--------------------------VRAAL--------RLPAF------ 689
              :..|....||.::                          |:..:        .:|.|      
 Frog   434 GNQVSEYISNTFLDKQHEVEMPSPAQKEKEKKKRPMSQISGVKKLMHSSSLTNSNIPRFGVKSEN 498

  Fly   690 ---------DSYEW-----------SDADVIHLMQTMFVELGFIEKFSIPVDTLREWLYEVYKHY 734
                     |..:|           .:..:..:|.|:|.|...::.|.||||||..:|..:..||
 Frog   499 EECLAKELEDVNKWGLNIFKVAEFSGNRPLTVVMHTIFQEREMLKTFKIPVDTLITYLMTLEDHY 563

  Fly   735 N-EVPFHNFRHCFCVAQMMYAITRQANLLSRLGDLECLILLVSCICHDLDHPGYNNIYQINARTE 798
            : :|.:||..|...|||..:.:.....|.:...|||.|..:.:...||:||||.:|.:.||..:|
 Frog   564 HADVAYHNNIHAADVAQSTHVLLSSPALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSE 628

  Fly   799 LALRYNDISPLENHHCSIAFRLLEHPECNIFKNFSRDTFNNIREGIIRCILATDMARHNEILTQF 863
            |||.|||.|.|||||.::.|:||:...|:||:|.::.....:|:.:|..:|||||::|..:|...
 Frog   629 LALMYNDSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQLLRKMVIDIVLATDMSKHMNLLADL 693

  Fly   864 MEITP-----------IFDYSNRAHINLLCMILIKVADISNEARPMDVAEPWLDRLLQEFFAQSA 917
            ..:..           :.:||:|..:   ...::..||:||..:|:.:...|.||:::|||.|..
 Frog   694 KTMVETKKVTSSGVLLLDNYSDRIQV---LQNMVHCADLSNPTKPLPLYRHWTDRIMEEFFRQGD 755

  Fly   918 AEKSEGLPVTPFMDPDKVSKPGSQVRFIGLVLLPLFEALGELVPELTELIIIPVRIALEYYRRL- 981
            .|:..|:.::|..|....|...|||.||..::.||:|...:||....:.|:..:....|:|:.. 
 Frog   756 RERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQSTI 820

  Fly   982 -----------------------------NDAQTKTRK----------SVADSNTSATSDSNSGT 1007
                                         .|.::.|.|          |.:||.|..|.||.|..
 Frog   821 PQSPSPAPDEQEEGKQGQTEKFQFELTLEEDGESDTEKDSGSQVEEDTSCSDSKTLCTQDSESTE 885

  Fly  1008 I 1008
            |
 Frog   886 I 886

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde9NP_727644.3 PDEase_I 739..967 CDD:278654 79/238 (33%)
pde4dXP_031749923.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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